G104445


Basic Information

Item Value
gene id G104445
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 18094043 ~ 18095156 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU141105
TGTACAGACTCTCTGGGCCACTGTAGCAGTCATGCAACCTGCCCACAGTCAATGCTAGGCTTATTTATTAGAGGCATACCCAGCGACTATGGTACCACTGCTCCCCGCACTCAGCACAGGTCATGAAGGTCATGGCGTCCTCGTCGTTATTTCCACTCCTCACCCAGGAGGGCAGAAAGAGGGTCCCGCGGGAGACCTGGGTCACCCTGCAGTTCATGCTCtggcagcggcggcagcgcacTTTCGTGGTGGTCGTCCCCTCAGGCTGCTGAGGTAGCTGGTGTTCACTAATAGCTGCTGCAGTGTATCCTTCCCTCAGGCTCCTGAGCTCCTCGCTTGCCATCTCCTCCACAGACATGCGGGCAAAAACCTCTGGGGCTAGGGTTCCTGTCAGAAGACCCTGGCGAAGATGAGGGTTCTTTGGATTCTTCAGGTTGGCCACCCTGCTTCTTACACAGGACTTGTACTTTGCCTGGTTTTGCCTGTGGAGAGCATGAATGTGCTGTTCAATGGCTTGAGCTAGGGTGGAAATCTGTCTTGTGTCTTCTGGGTTTGTGGGTTTCTGGTCTGGGATCAAGGCTTGGATAAGAAGCTCCACACACTTGGTTCTCACAGGTTTGGAGTCTGTGGAACTGGTAGACTGAACCCTAGAATCTTCTCCGTTGTGGTTCTCTGGAACTGAAGCTGTGGACTTGCTATCATCTGCCTTCAGTAAAAGTGCAGTGATTTTAGAAGATGGTAGATCTGAATCAGAACTTGACATCTGTTGGACATCACTGTGCTGAACTGTTGGGCCCAAAACTGTTTCAGTCTCAGCACTTGGAACAGATTGAGCCATTTCAGGTGGTCCATGTTCTTTTATTTGACTTGTGTCTTTGGTACTGCTGTGTCCTTGGGATGAGTTGTACATCCCTTTCCATTTTGAGAGCAGTTCCTTTGCTGTTTTGCGAACACTAGTTTGCACTGGACATGATTTTAATAGCTGATAAACGGTCTTGGCGATGTCAGTGGTCTGCAGCTGCTCTAATGTTACAGGACTGTTGCTCAAGTCTGCAAGCAGAGATGAAACATCTTCATAATTGCAACCTTTTTGTAGTTTTTCTATTTGAATAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141105 True 1114 lncRNA 0.49 1 18094043 18095156

Neighbor

gene id symbol gene type direction distance location
LOC103032361 gpm6ba,LOC108434682,LOC108259029,LOC107552377,LOC107588840,LOC107654257,LOC107667658 coding upstream 11581 18009302 ~ 18082462 (+)
gemin8 gemin8 coding upstream 87532 17998315 ~ 18006511 (+)
LOC103027494 NA coding upstream 131325 17950021 ~ 17962718 (+)
hsf2bp LOC106595116 coding upstream 149318 17934859 ~ 17944725 (+)
ing1 ing1 coding upstream 197606 17892761 ~ 17896437 (+)
LOC103032036 LOC108258971,LOC108434686,LOC107588835,LOC107667659,LOC107742634,LOC107739811,LOC107700106,LOC107552381 coding downstream 97542 18192698 ~ 18214872 (+)
LOC111193482 NA coding downstream 240989 18336145 ~ 18337262 (+)
arhgap6 arhgap6 coding downstream 309350 18404506 ~ 18566714 (+)
mid1 mid1,LOC103030906,LOC106575281,LOC106574413 coding downstream 547552 18642708 ~ 18742642 (+)
LOC103031642 ednrb,LOC108434743,LOC105911940,LOC106569465,LOC107658690,LOC107566659 coding downstream 694367 18789523 ~ 18808162 (+)
G104383 NA non-coding upstream 101594 17924950 ~ 17992449 (+)
G104392 NA non-coding upstream 101896 17970934 ~ 17992147 (+)
G104396 cbs,LOC107715910,LOC106593678,LOC107557921,LOC106562750 non-coding upstream 111239 17977296 ~ 17982804 (+)
G104374 ube2a,ube2al,LOC107702882,LOC103029486,LOC107552373,LOC108266561,LOC103021436,LOC108259060,LOC107588833,LOC105934920 non-coding upstream 128568 17896669 ~ 17965475 (+)
G104378 NA non-coding upstream 188044 17903955 ~ 17905999 (+)
G104448 NA non-coding downstream 75390 18170546 ~ 18170758 (+)
G104446 NA non-coding downstream 93554 18188710 ~ 18191210 (+)
G104474 NA non-coding downstream 119940 18215096 ~ 18215471 (+)
G104478 NA non-coding downstream 120450 18215606 ~ 18216090 (+)
G104482 NA non-coding downstream 150479 18245635 ~ 18246339 (+)
LOC111193547 NA other upstream 674905 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 955070 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 1199451 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 1519610 16555694 ~ 16574433 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other upstream 1586256 16463938 ~ 16507787 (+)
G104656 pcdh8 other downstream 823904 18919060 ~ 18923203 (+)
nfkbiz nfkbiz other downstream 1639070 19734226 ~ 19744924 (+)
G105276 NA other downstream 2894117 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 2923882 21019038 ~ 21028990 (+)
G105357 NA other downstream 3232036 21327192 ~ 21369204 (+)

Expression


Co-expression Network