G104478


Basic Information

Item Value
gene id G104478
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 18215606 ~ 18216090 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU141155
ttttttttcacGCAAGTTAACTATAGGCTGGGCTTGGGTTTacattggcaaatgtgtcccccccaatatcaagcccgctcctacgcccttaaCCTAAAATGATTTTCCATGGTAAGTGAAATCACCTGAGACCTTAAATAACTTTTCCTATTGCAAACCAAGTGGCCTTTGTAAATGTTTCAATCCTCCAGTCCTCTCTTATTAGTGAATGATGATCACTTGAGAGCTGTCTCGTTTGAAAATAGCTTCTATTTCCTGTAAAACTGATGTTTACTCTTCAGGTTGTGGCTTTTGTATCATGGCAACAATGTTTGTACAGacatatacagtaaaacacatttttttaaacagatattttatttttttccccataatGTTTTTCCACGATCACTTTATTTGGTAATCCTGCCGTATGGACCAACAGTATCTTGTcatgtggcaaaaaaaaaaaaatcctttaaaatcaAATTTCACAGTCTGTGATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141155 True 485 lncRNA 0.36 1 18215606 18216090

Neighbor

gene id symbol gene type direction distance location
LOC103032036 LOC108258971,LOC108434686,LOC107588835,LOC107667659,LOC107742634,LOC107739811,LOC107700106,LOC107552381 coding upstream 734 18192698 ~ 18214872 (+)
LOC103032361 gpm6ba,LOC108434682,LOC108259029,LOC107552377,LOC107588840,LOC107654257,LOC107667658 coding upstream 133144 18009302 ~ 18082462 (+)
gemin8 gemin8 coding upstream 209095 17998315 ~ 18006511 (+)
LOC103027494 NA coding upstream 252888 17950021 ~ 17962718 (+)
hsf2bp LOC106595116 coding upstream 270881 17934859 ~ 17944725 (+)
LOC111193482 NA coding downstream 120055 18336145 ~ 18337262 (+)
arhgap6 arhgap6 coding downstream 188416 18404506 ~ 18566714 (+)
mid1 mid1,LOC103030906,LOC106575281,LOC106574413 coding downstream 426618 18642708 ~ 18742642 (+)
LOC103031642 ednrb,LOC108434743,LOC105911940,LOC106569465,LOC107658690,LOC107566659 coding downstream 573433 18789523 ~ 18808162 (+)
LOC103031957 LOC103031957 coding downstream 611189 18827279 ~ 18858363 (+)
G104474 NA non-coding upstream 135 18215096 ~ 18215471 (+)
G104446 NA non-coding upstream 24396 18188710 ~ 18191210 (+)
G104448 NA non-coding upstream 44848 18170546 ~ 18170758 (+)
G104445 NA non-coding upstream 120450 18094043 ~ 18095156 (+)
G104392 NA non-coding upstream 223459 17970934 ~ 17992147 (+)
G104482 NA non-coding downstream 29545 18245635 ~ 18246339 (+)
G104483 NA non-coding downstream 41507 18257597 ~ 18279808 (+)
G104499 NA non-coding downstream 145942 18362032 ~ 18448106 (+)
G104502 msl3,LOC107724056,LOC107742416 non-coding downstream 168785 18384875 ~ 18394066 (+)
G104534 NA non-coding downstream 231699 18447789 ~ 18510642 (+)
LOC111193547 NA other upstream 796468 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 1076633 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 1321014 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 1641173 16555694 ~ 16574433 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other upstream 1707819 16463938 ~ 16507787 (+)
G104656 pcdh8 other downstream 702970 18919060 ~ 18923203 (+)
nfkbiz nfkbiz other downstream 1518136 19734226 ~ 19744924 (+)
G105276 NA other downstream 2773183 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 2802948 21019038 ~ 21028990 (+)
G105357 NA other downstream 3111102 21327192 ~ 21369204 (+)

Expression


Co-expression Network