G104499


Basic Information

Item Value
gene id G104499
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 18362032 ~ 18448106 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU141188
GATTTATTCTAGTCCATTATACAAACAGGCAAGAAATAATTaactgggagaaaaaaaaaaaaaaacagatctgttAGACAACACACAGTTtacagtagggctgcacaatgtaCTGGCTGCTAATGGTCATATAGTGAGACTTCATATAGTGGGCTCTTTATATTCCTGATATCATAggaggcgttttttttttatggggggGAAAAAGGTTTTTTGTAAAGGTTTGTATTAATTTCCAAATTCATTTCTGCCAATGACAATAAGCTTAATTAGCTTAGACCTCATAACAAGGAACTGCCTGCCTACAAACTGGCGAcagacttcagtggtctatagcgtctaaattgtaaaaaaattgCGTCTAAATTGTATCCATCCTACACTGTCCCCAATAGGcaatatataaagctctggaaaaaagttttaatttttgcagcaggagtggcataaagttatccaaaagcagcgtgtaagactggtggaggagaacatgccaacgtGCATGAaacctttgattaaaaaccagggtattccactgaatattgatttctgaactcttaaaactttataaatatgaacttgttttctttgcattatttgaggtcttttttgttatttcagccatttctcattttctgcagataaatgctctaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141188 True 656 lncRNA 0.35 2 18362032 18448106

Neighbor

gene id symbol gene type direction distance location
LOC111193482 NA coding upstream 24770 18336145 ~ 18337262 (+)
LOC103032036 LOC108258971,LOC108434686,LOC107588835,LOC107667659,LOC107742634,LOC107739811,LOC107700106,LOC107552381 coding upstream 147160 18192698 ~ 18214872 (+)
LOC103032361 gpm6ba,LOC108434682,LOC108259029,LOC107552377,LOC107588840,LOC107654257,LOC107667658 coding upstream 279570 18009302 ~ 18082462 (+)
gemin8 gemin8 coding upstream 355521 17998315 ~ 18006511 (+)
LOC103027494 NA coding upstream 399314 17950021 ~ 17962718 (+)
mid1 mid1,LOC103030906,LOC106575281,LOC106574413 coding downstream 194602 18642708 ~ 18742642 (+)
LOC103031642 ednrb,LOC108434743,LOC105911940,LOC106569465,LOC107658690,LOC107566659 coding downstream 341417 18789523 ~ 18808162 (+)
LOC103031957 LOC103031957 coding downstream 379173 18827279 ~ 18858363 (+)
sugt1 sugt1,LOC104941757 coding downstream 412623 18860729 ~ 18895531 (+)
LOC103024565 LOC108434738 coding downstream 560460 19008566 ~ 19012966 (+)
G104483 NA non-coding upstream 82224 18257597 ~ 18279808 (+)
G104482 NA non-coding upstream 115693 18245635 ~ 18246339 (+)
G104478 NA non-coding upstream 145942 18215606 ~ 18216090 (+)
G104474 NA non-coding upstream 146561 18215096 ~ 18215471 (+)
G104446 NA non-coding upstream 170822 18188710 ~ 18191210 (+)
G104504 NA non-coding downstream 121345 18569451 ~ 18573534 (+)
G104588 NA non-coding downstream 200109 18648215 ~ 18649075 (+)
G104658 NA non-coding downstream 481929 18930035 ~ 18930393 (+)
G104660 NA non-coding downstream 492992 18941098 ~ 18956053 (+)
G104667 NA non-coding downstream 550429 18998535 ~ 19026586 (+)
LOC111193547 NA other upstream 942894 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 1223059 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 1467440 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 1787599 16555694 ~ 16574433 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other upstream 1854245 16463938 ~ 16507787 (+)
G104656 pcdh8 other downstream 470954 18919060 ~ 18923203 (+)
nfkbiz nfkbiz other downstream 1286120 19734226 ~ 19744924 (+)
G105276 NA other downstream 2541167 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 2570932 21019038 ~ 21028990 (+)
G105357 NA other downstream 2879086 21327192 ~ 21369204 (+)

Expression


Co-expression Network