G104502 (msl3,LOC107724056,LOC107742416)


Basic Information

Item Value
gene id G104502
gene name msl3,LOC107724056,LOC107742416
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 18384875 ~ 18394066 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU141192
GGTCGAGCATCCTGCACCATCATTGATCGGCTGAAAGAATTTGGACGAGCTGACTTTCTTGAACTGAGCCTGCTCGTTGGGATACAGGAGGATTAAAGGTAACGTGAAGTCAAAGGTGATCCTCAAGCCATCCACCATCTCCTTACAAAGCTCCTCATTCTTCTCTGGTGGTATATAGTGCGGGTTCAGGTTGGCCTGTGTTGAGCTCTGAGGGTGCCGGTAGCGCTCGTTGGCAGAAAAGGCAGCATTTATAGTGAAGTGTTTCACGTAGGACTCCAGAATGTTTACTATGTTCATCGGGCTCGGGAGCTTCACAAGCTTCTTTCTCTTGTTGACATAATAGCAGTCCTCCTCCAGCTTCTTCTTAAGGACTTCAGGGATGTCTATGTTTATAGCGATGGTCTTATCCTCATTCTCCCTCTTGGCATGTGTCTCTTGCTCTTCCCTCATTTCGTCCAAATCCTCAGATGACTCGCTCTCGCTTTTTAAAGACTCTGGATCGGAATCCTCCTCGCCGCTGTCATCAGATGATGAGATCAAAGAAGCATCGTCGCTCTCCTCCTTTTCCTCTTCAGGTAAGCCTTTCAGCACAGAGTTAACACCAGGCAAACGACAACGTCGCTTCCTCCATCCCTTCCTCCTCATGCGAGCCAAAGCCTTGCGTGCCAGTTTACGTTGTAATTTCCGATTTTCCTCCGAATCTCTGAGAACATGATCCTCTGCAGCCCAGCGATCCCAGCTCCTGTTCCAACCATTGAAGTGAATCAGATACTTCGGGACCCGCCTGCTGCCCTTCTCATCTTTTCCAACTACAATGTCGACCACCTTCGCGTCGTACAGCACTTTGGCCTTGGACGGGTCGGGTTCGAAGCACAGCACCTTTTCTCCTTTGCGGAATTTAAATTTCATTCCCCGTGAGTTCATTTGTTCATCATGGCGATGCGGAGAGGAGGAACAGTGGACCCTCCGCTCCTTAACCCGTTCCCTGCCGGACTCCAATCCCGCTCAAAACAGTGGGGAACTCCGCGAGGCCTTCCCAATGA

Function

symbol description
msl3 Enables DNA binding activity; histone acetyltransferase activity (H4-K16 specific); and methylated histone binding activity. Involved in histone H4-K16 acetylation and regulation of transcription, DNA-templated. Located in nucleus. Part of MSL complex. Implicated in Basilicata-Akhtar syndrome.

NR:

description
PREDICTED: male-specific lethal 3 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141192 True 1043 lncRNA 0.50 8 18384875 18394066

Neighbor

gene id symbol gene type direction distance location
LOC111193482 NA coding upstream 47613 18336145 ~ 18337262 (+)
LOC103032036 LOC108258971,LOC108434686,LOC107588835,LOC107667659,LOC107742634,LOC107739811,LOC107700106,LOC107552381 coding upstream 170003 18192698 ~ 18214872 (+)
LOC103032361 gpm6ba,LOC108434682,LOC108259029,LOC107552377,LOC107588840,LOC107654257,LOC107667658 coding upstream 302413 18009302 ~ 18082462 (+)
gemin8 gemin8 coding upstream 378364 17998315 ~ 18006511 (+)
LOC103027494 NA coding upstream 422157 17950021 ~ 17962718 (+)
arhgap6 arhgap6 coding downstream 10440 18404506 ~ 18566714 (+)
mid1 mid1,LOC103030906,LOC106575281,LOC106574413 coding downstream 248642 18642708 ~ 18742642 (+)
LOC103031642 ednrb,LOC108434743,LOC105911940,LOC106569465,LOC107658690,LOC107566659 coding downstream 395457 18789523 ~ 18808162 (+)
LOC103031957 LOC103031957 coding downstream 433213 18827279 ~ 18858363 (+)
sugt1 sugt1,LOC104941757 coding downstream 466663 18860729 ~ 18895531 (+)
G104483 NA non-coding upstream 105067 18257597 ~ 18279808 (+)
G104482 NA non-coding upstream 138536 18245635 ~ 18246339 (+)
G104478 NA non-coding upstream 168785 18215606 ~ 18216090 (+)
G104474 NA non-coding upstream 169404 18215096 ~ 18215471 (+)
G104446 NA non-coding upstream 193665 18188710 ~ 18191210 (+)
G104534 NA non-coding downstream 53723 18447789 ~ 18510642 (+)
G104504 NA non-coding downstream 175385 18569451 ~ 18573534 (+)
G104588 NA non-coding downstream 254149 18648215 ~ 18649075 (+)
G104658 NA non-coding downstream 535969 18930035 ~ 18930393 (+)
G104660 NA non-coding downstream 547032 18941098 ~ 18956053 (+)
LOC111193547 NA other upstream 965737 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 1245902 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 1490283 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 1810442 16555694 ~ 16574433 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other upstream 1877088 16463938 ~ 16507787 (+)
G104656 pcdh8 other downstream 524994 18919060 ~ 18923203 (+)
nfkbiz nfkbiz other downstream 1340160 19734226 ~ 19744924 (+)
G105276 NA other downstream 2595207 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 2624972 21019038 ~ 21028990 (+)
G105357 NA other downstream 2933126 21327192 ~ 21369204 (+)

Expression


Co-expression Network