G104680


Basic Information

Item Value
gene id G104680
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 19031017 ~ 19031311 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU141400
TCATACAGCGCTTCAGCTGCAGCTCAGCGAGGGGTTTACAGAGCCCGTGACCGGCTCCTCCGCTGCGGGCGCTTCTAACTCAGCGCTGGTGTTTTAATTAAGCTTCATCCAGGACCGACACAGCGAGTAAAACACGGGGAATGGATAACTGCGCTCGCTTCAGGGACGAAAAGTACAAAAACTGGCTGAAAGCGGCCGAGAGTCTCTACATCCTGAGAAACAGCATTCGCGACTTCGTCGAAAACGAAACCGAAACTCTTCACAAGACTTTACGTAAAAAACTAAATAGCGATAT
>TU141402
TCATACAGCGCTTCAGCTGCAGCTCAGCGAGGGGTTTACAGAGCCCGTGACCGGCTCCTCCGCTGCGGGCGCTTCTAACTCAGCGCTGGTGTTTTAATTAAGCTTCATCCAGGACCGACACAGCGAGTAAAACACGGGGAATGGATAACTGCGCTCGCTTCAGGGACGAAAAGTACAAAAACTGGCTGAAAGCGGCCGAGAGTCTCTACATCCTGAGAAACAGCATTCGCGACTTCGTCGAAAACGAAACCGAAACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141400 True 295 lncRNA 0.50 1 19031017 19031311
TU141402 False 257 lncRNA 0.53 1 19031017 19031273

Neighbor

gene id symbol gene type direction distance location
LOC103033226 NA coding upstream 8096 19014406 ~ 19022921 (+)
LOC103024565 LOC108434738 coding upstream 18051 19008566 ~ 19012966 (+)
sugt1 sugt1,LOC104941757 coding upstream 135486 18860729 ~ 18895531 (+)
LOC103031957 LOC103031957 coding upstream 172654 18827279 ~ 18858363 (+)
LOC103031642 ednrb,LOC108434743,LOC105911940,LOC106569465,LOC107658690,LOC107566659 coding upstream 222855 18789523 ~ 18808162 (+)
LOC103024880 NA coding downstream 2094 19033405 ~ 19050916 (+)
LOC111193549 NA coding downstream 26087 19057398 ~ 19067487 (+)
LOC103025512 fgf14,LOC108434733,LOC108258297,LOC105911936 coding downstream 137572 19168883 ~ 19309236 (+)
LOC103035666 LOC108434719 coding downstream 377996 19409307 ~ 19411213 (+)
LOC103025817 LOC108434731,LOC106575534,LOC106575594 coding downstream 381709 19413020 ~ 19419379 (+)
G104666 NA non-coding upstream 1652 19027152 ~ 19029365 (+)
G104667 NA non-coding upstream 4431 18998535 ~ 19026586 (+)
G104660 NA non-coding upstream 74964 18941098 ~ 18956053 (+)
G104658 NA non-coding upstream 100624 18930035 ~ 18930393 (+)
G104588 NA non-coding upstream 381942 18648215 ~ 18649075 (+)
G104702 NA non-coding downstream 87343 19118654 ~ 19120266 (+)
G104706 NA non-coding downstream 116393 19147704 ~ 19150962 (+)
G104712 NA non-coding downstream 174115 19205426 ~ 19205714 (+)
G104729 NA non-coding downstream 291697 19323008 ~ 19323230 (+)
G104798 NA non-coding downstream 502723 19534034 ~ 19534314 (+)
G104656 pcdh8 other upstream 107814 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 1611879 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 1892044 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 2136425 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 2456584 16555694 ~ 16574433 (+)
nfkbiz nfkbiz other downstream 702915 19734226 ~ 19744924 (+)
G105276 NA other downstream 1957962 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 1987727 21019038 ~ 21028990 (+)
G105357 NA other downstream 2295881 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 3223774 22255085 ~ 22283453 (+)

Expression


Co-expression Network