G104799


Basic Information

Item Value
gene id G104799
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 19534456 ~ 19536048 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU141551
taagtgagtggtctcttatttttttccagatttgtaAATATGGGGTTTATATGTTGAGACATTTTTGAGTTGTTAAGCTGAGAAGACGGCAAGGTcagatttttgtgtaaaacgaGGCGCCTTCGTAAATGTGTTGTGCACCATTAAAACTAATGTGTGAAGTAcctttacaattaaataaataaatcctcaaggcagaaaaaaacttaatcatttttttgtaaTCGAGGTACTTGATTTATTCAAGGAATCGTTTCACTCTGAGTCTCAAGgaatgtcaattaataattagttgagacattacccaaccatttaaaaatgtttattattattatcatatagATAGTTATTTGTtgcccttattgtaaagtgatCAGTTATAAATCTAAATATTCAATAATAATCATGTGTGCagctaaaaatgtttattttttattattgtttggtCTATTTTTAATGAATGCCAATTAGTGGTACTTAAACGTGTAAAAGTATGAATCCAGGTCTTATTTTGCGTAAATTATACACATGCTCAGGAAAATATTGTAGAATTTGATTTTCTTTCTGATCTAGATCCCACAAACTTTAATGAAtaccacattttttgtgtaaaaactgTCCTGGTACTATTTTTACAATaacgtttttaatttttatattaaataaaagtgttgCCAGCTCAATGTCACTGATTGACTGAGAACAGACCACAAATATTCAGTCAACAGCACCCAGTGGGCAGGGCAGTGTACTGTGGGCATCTACATCTACAAGATGGAGCATCTAGGCAGGAGTTTATAAGACGAGTGGAGGAGTTAGTGGAaacaagtgtttaaaaactccagcagcactgctgtctctgATCCACTTATATACCATAACAACATGGGCAAAATGGGtaaaacaaggaggtggtcattaTGTTATGACTGGACTGTGTATGAGTTAAGATATAGGACAGAtctgcatatatattttaatgtaaatttgctACTTGATAGCTGCTCGTACAAACATGAACAAGCCAATACGTTTGTGTGCTATAAGAGAATATTGCATATTGCTGTAAGTACTGTATTTATGCATTAGACATATATTTTTGGAGAATCTAAGACTatctataaatgtatgtatggcTTGagtgtgagtgaatgaatgatgGTGTGCATAGGAAGCAGAGTCAAATCTATAATCTATCAAACAAAATgtcttagtgttttgtttttccaaaagactttttaagatatttcatatacatacatatatatttttttctgcaacaTTGCTGCCAATCCTGTGTCCATGTATTACCTTATATATGTTTAGGGTGATTAAGTGTAACATGGTGGGTGTTACACACCAGTTACAGTAccttaattattcattattcaaaaATACTGCACCTCTGCCTctctatgtactgtatgtttataaGATGCTTTGTGTTTATGTTCCTACGATgcttgtatttatatttatgagaTGCTTCGAATAGTGTCTTAAGGCTGTAGCGCATAATTAAACATGCCTTTGCAGCTGCTCCAATATATATGAAGGTATTTGCAATCGCCACAGAAATCTGGTCATTTGTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141551 True 1593 lncRNA 0.33 1 19534456 19536048

Neighbor

gene id symbol gene type direction distance location
LOC103036999 LOC108434729 coding upstream 1584 19482626 ~ 19532872 (+)
LOC103036301 pspc1,LOC108258933,LOC108434730 coding upstream 77290 19425383 ~ 19457166 (+)
LOC103025817 LOC108434731,LOC106575534,LOC106575594 coding upstream 115077 19413020 ~ 19419379 (+)
LOC103035666 LOC108434719 coding upstream 123243 19409307 ~ 19411213 (+)
LOC103025512 fgf14,LOC108434733,LOC108258297,LOC105911936 coding upstream 225220 19168883 ~ 19309236 (+)
LOC103026133 LOC108434715 coding downstream 26631 19562679 ~ 19576104 (+)
LOC103040050 LOC108434714,LOC108258858 coding downstream 42241 19578289 ~ 19591937 (+)
LOC103034347 LOC108429797,LOC108258862 coding downstream 58261 19594309 ~ 19607808 (+)
LOC103026741 LOC108429797 coding downstream 87380 19623428 ~ 19648111 (+)
LOC103039332 LOC108429797,LOC108258862 coding downstream 123957 19660005 ~ 19684150 (+)
G104798 NA non-coding upstream 142 19534034 ~ 19534314 (+)
G104729 NA non-coding upstream 211226 19323008 ~ 19323230 (+)
G104712 NA non-coding upstream 328742 19205426 ~ 19205714 (+)
G104706 NA non-coding upstream 383494 19147704 ~ 19150962 (+)
G104702 NA non-coding upstream 414190 19118654 ~ 19120266 (+)
G104809 fdx1,LOC108434718,LOC108259004,LOC102789999 non-coding downstream 7655 19543703 ~ 19558989 (+)
G104811 NA non-coding downstream 23985 19560033 ~ 19560591 (+)
G104841 NA non-coding downstream 154052 19690100 ~ 19690589 (+)
G104891 rpl24,LOC107575619,LOC107551103,LOC107751658,LOC107662676 non-coding downstream 170598 19706646 ~ 19710814 (+)
LOC111193552 NA non-coding downstream 246081 19782129 ~ 19782686 (+)
G104656 pcdh8 other upstream 611253 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 2115318 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 2395483 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 2639864 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 2960023 16555694 ~ 16574433 (+)
nfkbiz nfkbiz other downstream 198178 19734226 ~ 19744924 (+)
G105276 NA other downstream 1453225 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 1482990 21019038 ~ 21028990 (+)
G105357 NA other downstream 1791144 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 2719037 22255085 ~ 22283453 (+)

Expression


Co-expression Network