G104809 (fdx1,LOC108434718,LOC108259004,LOC102789999)


Basic Information

Item Value
gene id G104809
gene name fdx1,LOC108434718,LOC108259004,LOC102789999
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 19543703 ~ 19558989 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU141564
TAATTgtttaatacattataatacgataaattaactttattaaccTTTTTCAGAACATCCCTTGTGTGTTATGTCATGATAAAACACTAGCTTCTCATTTAAAACCTATGAACAATAAATGTCTCATCATTGGGCCTTAAAATCGGCTTGCATTGACCTGCAGTAGGGACTTCCTCAAAGAACTACACATCAAGTGTATCATCAGTGTATCATCACTACTATAATAAAGCTATGTATCTTAAAAATGATACTGTTAtagtagtgaaaaaaaaacattatcgtTAGTTCTAATATTAGTGTAATtacattttctgattttattcCTGATAATGGAGTAAAAATACAACTTCTGttgataaacagataaaaaaccTGCATGGAGCTCTACAGGTGGACCCTTACAATGCATCCCAGACAGGATGACAAGACACTCATCATACAAAGGTGATCAGTCAAAACCATCACGCAGGTCCTGGAACTGCAATCTTCTTAAATCTTTTGAAATGACATTGGTATACACTAACTGAATGGGTGCAGTAGCTGCAGGCACCTGAAGGTGAAGCTAAGCAGATCCATCTGACTGCCTAATATCTGCCACAGCCTCTGGCAGACGTACTGTGACACCATCAAGCGACTTTGTGAGgcaaatctggcaacccaggcGGGATGTGTCTGTGAGACCATAAGCAAGATCCAGCATGTCCATCTCCTCATCACTGATGGGTCCGAGCTGTTTGTAAACCTCTTCTTTAAAAATGACGTGACAGGTAGAACAAGCTAGAGTTCCCTCACATGCTCCAAATCCGTCGAAGTCAAGTTCTTGATCAACGACGACATCTAACAGGGATTCACCAGGGGAAGCCTTGACTGTAATTTTCTCTCCATCTCGATTGATGAAATTAACAGTCACCTTGTTTTCTGACCTGAGAGGCTGAACGACACTAGAAGAGGTAATGTCTCTCCTCTGGACGCACTCTCTGCTCAGTGGAGGCAAAGTCCTGGAGGAGCTCCGCAGCACCACACTCCAGCCCGCTAATCTCCTCGCCGCCGCAGATAAAGACATGGTTTTAGCCGAATAAACGCTAGAACAGGTTTAGTAGATGAAGTCCACTCCTCCGGCGGATCTCTGAAGCAGAGTAAAGGCTGTTTAGCCGGTTAAGTCCTTCAGAAAGCCGCTGCCAGGCTCTCCTTTCAGCCCCCGGTGGAAGTATACAGCGCTAGTGTGTTAGCAGCTGATGCTAATCGCTGTTAGCTCGGCGCAGAGTTCAGAGTTTCcccacagatagatagattacaTTGCATAACCCTGAAGATAACACACAGCCGGCCTGTTTAACCAGAAACAAGGTCCAAACCGAGGATATTTCAGCTAGATAAAGGAATAATCTaatcaaactgaaataatttgtccactgctgttACTGAACAAAACTCCAACACCCGAATATAAAAGCTAAGTAAACTATTGGACGAAACTACTATCAAA

Function

symbol description
fdx1 Predicted to enable 2 iron, 2 sulfur cluster binding activity; electron transfer activity; and metal ion binding activity. Acts upstream of or within negative regulation of epiboly involved in gastrulation with mouth forming second. Is expressed in brain; digestive system; heart; and pleuroperitoneal region. Orthologous to human FDX1 (ferredoxin 1).

NR:

description
PREDICTED: calcium-activated chloride channel regulator 4A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141564 True 1486 lncRNA 0.42 4 19543703 19558989

Neighbor

gene id symbol gene type direction distance location
LOC103036999 LOC108434729 coding upstream 10831 19482626 ~ 19532872 (+)
LOC103036301 pspc1,LOC108258933,LOC108434730 coding upstream 86537 19425383 ~ 19457166 (+)
LOC103025817 LOC108434731,LOC106575534,LOC106575594 coding upstream 124324 19413020 ~ 19419379 (+)
LOC103035666 LOC108434719 coding upstream 132490 19409307 ~ 19411213 (+)
LOC103025512 fgf14,LOC108434733,LOC108258297,LOC105911936 coding upstream 234467 19168883 ~ 19309236 (+)
LOC103026133 LOC108434715 coding downstream 3690 19562679 ~ 19576104 (+)
LOC103040050 LOC108434714,LOC108258858 coding downstream 19300 19578289 ~ 19591937 (+)
LOC103034347 LOC108429797,LOC108258862 coding downstream 35320 19594309 ~ 19607808 (+)
LOC103026741 LOC108429797 coding downstream 64439 19623428 ~ 19648111 (+)
LOC103039332 LOC108429797,LOC108258862 coding downstream 101016 19660005 ~ 19684150 (+)
G104799 NA non-coding upstream 7655 19534456 ~ 19536048 (+)
G104798 NA non-coding upstream 9389 19534034 ~ 19534314 (+)
G104729 NA non-coding upstream 220473 19323008 ~ 19323230 (+)
G104712 NA non-coding upstream 337989 19205426 ~ 19205714 (+)
G104706 NA non-coding upstream 392741 19147704 ~ 19150962 (+)
G104811 NA non-coding downstream 1044 19560033 ~ 19560591 (+)
G104841 NA non-coding downstream 131111 19690100 ~ 19690589 (+)
G104891 rpl24,LOC107575619,LOC107551103,LOC107751658,LOC107662676 non-coding downstream 147657 19706646 ~ 19710814 (+)
LOC111193552 NA non-coding downstream 223140 19782129 ~ 19782686 (+)
G104921 NA non-coding downstream 254394 19813383 ~ 19863419 (+)
G104656 pcdh8 other upstream 620500 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 2124565 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 2404730 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 2649111 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 2969270 16555694 ~ 16574433 (+)
nfkbiz nfkbiz other downstream 175237 19734226 ~ 19744924 (+)
G105276 NA other downstream 1430284 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 1460049 21019038 ~ 21028990 (+)
G105357 NA other downstream 1768203 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 2696096 22255085 ~ 22283453 (+)

Expression


Co-expression Network