G104950


Basic Information

Item Value
gene id G104950
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 19996579 ~ 20008771 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU141780
AGGATGATGGTGCTCTTTTGAAAACATACCAGAACGAGAgcagttttgtattttgttaatttttaaataaatcctcTCTCTTCAGCTTTTCTCCATCACCAAAACGACTGTGACTGAGAAGGAACCACTTTGCCAACTTCTACAAGAGACGGATCAACTTCAGCGAGAGCAGGCTGATAGAATAAGGAACTTAACCAAGTTGTTGGTTACAGCTTCAAATGTGGGTAATGTGTTTTAGATCTAACTTCAATAAAGATTCTGAtgccttttactttttttttttttttttttaaaacaagccttaaaaataaatttgcgAATCCTGTGGAAATCGGCGTGGGTCATGTTGCATCATATCCTGTGgaaatttagttttaattgcttttcctgtacaaaaataaaacacccaaaaaaaaaaaaaattaccaggTTAGCTTAGCCTCTTGAAGGCTTAACAGGTGTTCTGTCGCGGTCATCGTAGCGGTCGGCGCGGCGATCATCGTAGCGGTCGCTCTGGCGGTCATCGTAGCGGTCATTTCGACGGTCGTCCGACCTCGGCCTACGATCATCATAGTCATCTCGGCGTTCAGAGTAGCGATCGCTCTGGATTTCATACTCAACCTTGGTATAGTCTTCATACTGGTCACGCTGGTTTGTCTTCTTCTCAGGCCTGCTCTCAACACGTCCGTTTTGACGCTCTTCAATCTCAGCAGGCTGTTTGTCCATATATTCTTCAACCTGTTGAGTGCCCAACTCGTATTGCTCGCCCTCCTCCTTCCTCTTACGACAGCAGCAGCAAATGATAACGACCAGAATGATTAGAAAAGCCACCACTCCGATTCCAATGAATCCTGCCGTGGAGGCAAGGTTCATAGAGGGTGGCATAACGGCCAAGGTCAGGTTAGTGGACTGCTGGCGAATTTTGTTGCTGGATGTGCAGATATAGTAACCACTGGTCTCCGAAGTGACATTGTAAAGTGACAGGACACCGGTCGCTTTTCCACTGGTACGTAGGTGTTGGGGTGCCCTCCTCTGAGCGACAGGTCAGGTTGATGTTCTGTCCAACCTCAGCTACTCCCTGAATCTTACAGATTGGTTTAGAAGGagccaCCAAAACCACAACACGTGTAGTGTCTGACAGTTTTCCTTTGTTGTCCTGAGGAATGGAAACTTTACACTCATGCACTCTAGTGTCTGCTGAAGTTAGTGAAATGAGTTGCAAGTTTGCAGTTCCTGTAGGGATGTCATACTGCAGTTTTGCCCTGCTTTCATAATCAGAGGATATATCAACAGTTGGAGCAGCGGCAGAAGAGATGTAGGCACTGAGTATTTCAATATCTGGATCACCATCAACATCTGGATGAGCGGTCCAGAAGATGTTAATAATTGGGTTTACTGGCTTCAGGGGTACAAACTTGCAGGGTATTGTTGCATTGTCACCTCGGGCAAATTCATAAGTCACTTGTGGTATATCAACATTTATGGCCAAAGTCAGGTAAACCACCCCGGAAAACACAAATATTGCGAGTGTCTCCTTTGCCATGGTTTAGAGCTAAAATCCGTGGTTGGAATGAACGCCGTGATCTGTAACCGCTTCAGATGAGCTTCCCTCTCAGCTCAGCTCAACAGGTGT
>TU141781
ccttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattaccaggTTAGCTTAGCCTCTTGAAGGCTTAACAGGTGTTCTGTCGCGGTCATCGTAGCGGTCGGCGCGGCGATCATCGTAGCGGTCGCTCTGGCGGTCATCGTAGCGGTCATTTCGACGGTCGTCCGACCTCGGCCTACGATCATCATAGTCATCTCGGCGTTCAGAGTAGCGATCGCTCTGGATTTCATACTCAACCTTGGTATAGTCTTCATACTGGTCACGCTGGTTTGTCTTCTTCTCAGGCCTGCTCTCAACACGTCCGTTTTGACGCTCTTCAATCTCAGCAGGCTGTTTGTCCATATATTCTTCAACCTGTTGAGTGCTAAACATGAAGGAAAAAGGTCAgtagaccatcaaaaatgatgAAGTCtagtgttaataaataaaaaggattatataatactaaaatataataagaTGCAAAATATAATAAGATGCAACCCAGATATTAAACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141780 True 1633 lncRNA 0.45 9 20001316 20008771
TU141781 False 500 lncRNA 0.41 4 19996579 20002389

Neighbor

gene id symbol gene type direction distance location
prss23 prss23,LOC107570079,LOC106575973 coding upstream 112088 19878775 ~ 19884491 (+)
ccdc81 NA coding upstream 174559 19799593 ~ 19822020 (+)
hikeshi hikeshi,LOC106574699 coding upstream 198388 19792874 ~ 19798191 (+)
eed eed coding upstream 204975 19780955 ~ 19791604 (+)
cep97 cep97 coding upstream 269471 19713576 ~ 19727108 (+)
LOC103043041 LOC108429787 coding downstream 73111 20081882 ~ 20145614 (+)
dusp27 dusp27,LOC102309085 coding downstream 144634 20153405 ~ 20165191 (+)
LOC103043852 pou2f1 coding downstream 161155 20169926 ~ 20197233 (+)
LOC103045165 LOC107751098,LOC108429813,LOC108258592,LOC107739159,LOC107739162 coding downstream 229874 20238645 ~ 20242346 (+)
LOC103045776 NA coding downstream 249419 20258190 ~ 20270628 (+)
G104944 NA non-coding upstream 49138 19946843 ~ 19947441 (+)
G104921 NA non-coding upstream 133160 19813383 ~ 19863419 (+)
LOC111193552 NA non-coding upstream 213893 19782129 ~ 19782686 (+)
G104891 rpl24,LOC107575619,LOC107551103,LOC107751658,LOC107662676 non-coding upstream 285765 19706646 ~ 19710814 (+)
G104841 NA non-coding upstream 305990 19690100 ~ 19690589 (+)
G105007 NA non-coding downstream 193864 20202635 ~ 20202939 (+)
G105008 NA non-coding downstream 194423 20203194 ~ 20205750 (+)
G105017 NA non-coding downstream 229079 20237850 ~ 20238248 (+)
G105018 NA non-coding downstream 234134 20242905 ~ 20243355 (+)
G105032 NA non-coding downstream 271943 20280714 ~ 20281486 (+)
nfkbiz nfkbiz other upstream 251655 19734226 ~ 19744924 (+)
G104656 pcdh8 other upstream 1073376 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 2577441 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 2857606 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 3101987 16888386 ~ 16894592 (+)
G105276 NA other downstream 980502 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 1010267 21019038 ~ 21028990 (+)
G105357 NA other downstream 1318421 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 2246314 22255085 ~ 22283453 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other downstream 2516486 22525257 ~ 22588961 (+)

Expression


Co-expression Network