G105032


Basic Information

Item Value
gene id G105032
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 20280714 ~ 20281486 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU141906
gcaaagtgcacaaaacactggatctcagaaagctattcaactattctatttttattaagttttaataAACTCAAAGTCCgtttcacactggagttctcctttaaagtcgATGAGGAAAACCAAATAAATGGGTTTTTGTCACGCTGCATAACTCACCTTCTCTTGAGTCTTGGTTTTCTGACTGgtttgctgacacagatgcaGCAGAACAGGCTCTATTTTGCCCACAAAACGTGTCCATGTGATCTTTAACATTAGCCAATAAGTGAAAGGCCTTCGGTTACATAAAAGTGTCCCTGTGGTCTTGCAGACACTGGGTGtgatttttggatttgtgtttttttttttgcttttccaaGCCTCAGAAATCTCCTGTGTTTGTGACAGGATACATTTTCACAAACATCTGTTGTGGAGAAGATTGTGCATTTGATTGACACCTGCTTTTCAAATAAAACATGGCTATGCCCACTTACATCTGATTGTCATCTTGATATTGATTGAAACCTTGACTTTAATTTCACTCTAATAACCACACACTTTTTGCCACTCACAGATTTGTAATATTGGattattttccttaataaatgaatgatcGATTCTGATCATTTTGTCTTATTTGGTTGATTTGCTTGTCTAACAATCTGATTACATTTTAGGTCAATTCTATGTAGAAATATAGAAACTTTTAAAGAGTATATGTATGTTTCTGTATCAATAGCATGTATTACATCAAAATCTGTTATATGTACTATACAATTGTACAATTGtac

Function

GO:

id name namespace
GO:0050878 regulation of body fluid levels biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0030162 regulation of proteolysis biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0051246 regulation of protein metabolic process biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0006508 proteolysis biological_process
GO:0050817 coagulation biological_process
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU141906 True 773 lncRNA 0.34 1 20280714 20281486

Neighbor

gene id symbol gene type direction distance location
LOC103046085 NA coding upstream 545 20271607 ~ 20280169 (+)
LOC103045776 NA coding upstream 10086 20258190 ~ 20270628 (+)
LOC103045165 LOC107751098,LOC108429813,LOC108258592,LOC107739159,LOC107739162 coding upstream 38368 20238645 ~ 20242346 (+)
LOC103043852 pou2f1 coding upstream 83481 20169926 ~ 20197233 (+)
dusp27 dusp27,LOC102309085 coding upstream 115523 20153405 ~ 20165191 (+)
LOC103046381 LOC108429788 coding downstream 162 20281648 ~ 20287435 (+)
LOC103027637 LOC108429819 coding downstream 9162 20290648 ~ 20312757 (+)
LOC103046697 NA coding downstream 33428 20314914 ~ 20323422 (+)
cul4a cul4a,LOC102780633 coding downstream 54346 20335832 ~ 20363691 (+)
lamp1 NA coding downstream 89938 20371424 ~ 20388362 (+)
G105018 NA non-coding upstream 37359 20242905 ~ 20243355 (+)
G105017 NA non-coding upstream 42466 20237850 ~ 20238248 (+)
G105008 NA non-coding upstream 74964 20203194 ~ 20205750 (+)
G105007 NA non-coding upstream 77775 20202635 ~ 20202939 (+)
G104950 NA non-coding upstream 271943 19996579 ~ 20008771 (+)
G105041 NA non-coding downstream 66833 20348319 ~ 20424575 (+)
G105044 NA non-coding downstream 112822 20394308 ~ 20397272 (+)
G105074 gas6,LOC107571980,LOC107573434 non-coding downstream 337304 20618790 ~ 20620441 (+)
G105079 NA non-coding downstream 367610 20649096 ~ 20652261 (+)
G105235 NA non-coding downstream 473807 20755293 ~ 20755532 (+)
nfkbiz nfkbiz other upstream 535790 19734226 ~ 19744924 (+)
G104656 pcdh8 other upstream 1357511 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 2861576 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 3141741 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 3386122 16888386 ~ 16894592 (+)
G105276 NA other downstream 707787 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 737552 21019038 ~ 21028990 (+)
G105357 NA other downstream 1045706 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 1973599 22255085 ~ 22283453 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other downstream 2243771 22525257 ~ 22588961 (+)

Expression


Co-expression Network