G105041


Basic Information

Item Value
gene id G105041
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 20348319 ~ 20424575 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU141924
tttttttttgtttttttttttttcttcttacactaataaagctgttttttagtatttaaagtGTACTAAAACTCAGGCAGTAACTGTTAAGTTATATCCATGCAGAGCTCACATTTAAAACCTTAATTAACAAAGGATGGGGTGCCAGAGAGAGGAGGATGCTGGATACAGGGATGGGAAGAAGAAGGGATTTACGGTTTGAGCCAGAAGGTGAGGGACAGGGGTGTTACTTCTCTGATTACTTTTCTGCAGCGGCTGCCCGGTATAGTTTGGCCCCCAGCTCCTCCAGCTCTTCTCTTTTATCCAGGTCTTGATACAGTCCAGCAGGCACCTGGCTCATCCCATAGATCAGCCCATACAGACAGCCTGCAATCAGACCTGTAGCACTGCTCTCTCCTGGAACAGAGACCATCAGCATCAATTAAAAATGCTCCAGctgttaaaacataaaaaagtgtatGATTTCTG

Function

GO:

id name namespace
GO:0072359 circulatory system development biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU141924 True 468 lncRNA 0.43 2 20348319 20424575

Neighbor

gene id symbol gene type direction distance location
LOC103046697 NA coding upstream 24897 20314914 ~ 20323422 (+)
LOC103027637 LOC108429819 coding upstream 35562 20290648 ~ 20312757 (+)
LOC103046381 LOC108429788 coding upstream 60884 20281648 ~ 20287435 (+)
LOC103046085 NA coding upstream 68150 20271607 ~ 20280169 (+)
LOC103045776 NA coding upstream 77691 20258190 ~ 20270628 (+)
tmco3 tmco3 coding downstream 39069 20463644 ~ 20488290 (+)
tfdp1 tfdp1 coding downstream 69892 20494467 ~ 20513140 (+)
grk1 grk1,grk1a,LOC107748333 coding downstream 94785 20519360 ~ 20530018 (+)
cenpe LOC107577987 coding downstream 107827 20532402 ~ 20564585 (+)
tmem255b tmem255b coding downstream 141554 20566129 ~ 20593330 (+)
G105032 NA non-coding upstream 66833 20280714 ~ 20281486 (+)
G105018 NA non-coding upstream 104964 20242905 ~ 20243355 (+)
G105017 NA non-coding upstream 110071 20237850 ~ 20238248 (+)
G105008 NA non-coding upstream 142569 20203194 ~ 20205750 (+)
G105007 NA non-coding upstream 145380 20202635 ~ 20202939 (+)
G105074 gas6,LOC107571980,LOC107573434 non-coding downstream 194215 20618790 ~ 20620441 (+)
G105079 NA non-coding downstream 224521 20649096 ~ 20652261 (+)
G105235 NA non-coding downstream 330718 20755293 ~ 20755532 (+)
G105271 NA non-coding downstream 403793 20828368 ~ 20860880 (+)
G105270 NA non-coding downstream 447216 20871791 ~ 20909285 (+)
nfkbiz nfkbiz other upstream 603395 19734226 ~ 19744924 (+)
G104656 pcdh8 other upstream 1425116 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 2929181 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 3209346 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 3453727 16888386 ~ 16894592 (+)
G105276 NA other downstream 564698 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 594463 21019038 ~ 21028990 (+)
G105357 NA other downstream 902617 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 1830510 22255085 ~ 22283453 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other downstream 2100682 22525257 ~ 22588961 (+)

Expression


Co-expression Network