G105044


Basic Information

Item Value
gene id G105044
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 20394308 ~ 20397272 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU141928
TGGAAGcgtttaattctataaaagaGTTCATATTACAAGAGCagattttacacattctacaggTGAGACAACTGTGTCGAATCGTAACACACATTATACATGTTCTTGCTTGAATCTGACAAAAGCCCTTGTAATAAAGAACAATCTAAGCCATAGTGCACACAGTAGTACCGGACCCTTCAGTTCACAGTAGTTTTACAACAGTCATCAGAATCCCACAGACCCACAAAAGGGTCCATATAGAGAAATGTGCAAAGATACCAAAAATAGAGCTTTATAAACTTTGGGAAAAAGTCTGAAATCTTTAAGACTTGCAAAACCACCATATACAGTAAAAAGATCACTGGGATTGGACTCCCATAACTGACAGCAAGACTACTTGAGCAAATTTGGGCCTTGTTTAGTAGTTAAGTGATTTGAGTTGAGGGGGTTTAATACTCACTAAATGAGCAAGATTATTTAGGCCCCTTCACACAATCTTAtttttacagacagaaaacaaacaaatatagtaGTGTTGTCTTTTACATAGAGTCTGAAATGTACAGACTGCAACCCTGCATAATTTTAAAATCCTGCTCTTTTTTCCTGCAATGTATGGATTTGATTTGGATCAGAACTCCGACATTGTGGCAAGCTCATATTGCTTATAgcagaacagaatagcatatATGACAAGTAGCAATCTGACTATAAAAATGCTGAATTTAACGACAAGTTAATAGAACTTCATGTAGCCAGATCCGATTTAGCCAGATTTCTTACATTTCCACTGGAGCAGGGAGTGCTTACACTAACAGTCCAGTCCAGTTTACTTTGCATAATTAAGATTAAGCACCTATAGTGCAGTGGgttaagcactgccactatgattgggcgctctcttcccacattactctaagggtgatgtccgcagcacaaggcgtctgtgagctataAGATATAAAAAGATAAAGTACCAAGTTTTCAAATACGCACCAAATAAGAGTATCACTTTTATTAGCATTCTATAATAGCATGCTCAGCTAGCTTATGTGGACatatttactaatttatttttttgaagtttGTCTAGATCAATCCTAGTCTGGTTGCGCCCAAAAAGAACTGGGAACTATAGCTTTACTCGCTAATGAGCACTTTTGTAGAGGAGCAAATTTACGGAgagcaaaaaaacagacaggaagcagagaaaaagaaacagtggAAATGTATCAGAGCCCTCCTTACTGAgcagagaaagcaaaaaaacactttgaagtTGGTGCGAAGGTTCCAATATGTTTGCAAAAAAGActatttctgttaaaaaaaaaaaaaaaaaaaaaatcatactcaTAGTGTAAAAGGGCCTAAACACTATAGGaactacaaacaaacaagccTAAAACAAGTGGCCCAAATTTCTCATCATAGAGTACTAGCTCTCTGTACAGGCTACAtctaaaaaggtaaaaacagtTCCCAGTCCCCTGTTTCATTATCACGTCATAGAGAAACTAAATAACAGCTTCTAAACAGTCTCTTGTATCAGAAGAAATACAGGACAGTGCAAATATGAGTCTGGAATGCTTTATAGAGAGTTAAGGCCTCAGCAGACGTCTTGCAGAGATAATGTTTGCTTGGATTCGGGTGAACAATGTGACAAGTGGGGAAAGTAAAGGCTGGGAGTGTAGGACACAGTCAGATGAAACCTCAGAAAGTGCTACTAAGCTCACAAGGTTGGCTTTGTGTAGGACTGGAGGATACTGACAAAATATTTAAGAAGAATACATTCCGTAATTTCAGTCTatgtaaaaattacaatattgacAGTATAGCATTTGCCATTGGTGTTCATGATCACATGCTGATAGAGTTGGgggaaatatttaaaatattagatcTCAATATTTAAAGAGATTTTtacaatacacagtatttatcgTGTTTTAACACGCAGACAAAATAGATCAGCAGTGACAGATTCTCCTACTTTGCTATTCAAATACTCCTTCATGCACAGTGCAGCACTTTCCATTCAATCTCTGCCACACATCGTGGTCTAAAGcgttgccactatgagcgggaggtcgcaggttcgaacccccgttcatgcagctcttgaagctgccggcgctcagagagaGGCCTCGCTCTCTCccggtgggtagatggtgctctttccctaCACCACtatagggtgatgtccacagcacagggcgtctgtgagctgatgtatcagaaccgagtcgctgtgtttttcttggcaatgctgcatcagcagcagctctaaaagaagcggtggctgacttcacgtgtgcctgaggaagcatgtgttaatcttcaccctcctaaagtggggcatcactagtgatagggtcctaatgagtcctaatgagtgggttggccgtacaaaattggggagaaaatgggaaaaatgtgaaataaaataatacaaaaaatcttTGCCACACATTATTCAATTTAACAGGATCTTTTGCACTTTATGTAATAAATCATACAGcagggtcagtgttctttaagtacTGATGATATCCTCAATATgcttattaaagcatattgtctatacaatatatatatatatatataaaatatgagcaAATTTAGTTTTGCAGGACGTATGCAGAGGCCTTTAGGGTTTAGGGCAGGAGTGTCACTCTTACCCGTAGGGTTAGGTcggTGTGGATAAGACTGAACACCTCTGGTCTGGAGTGAAGTGGGTGGATCAGGGACAGGGTCAAGATTCTTCCGCCATTATCTGTGCTCTGCATGTCTCACGCAGCTTGCTGATTGTTGCCATTGGGAGGCTGCCAGGTTCTTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141928 True 2826 lncRNA 0.40 2 20394308 20397272

Neighbor

gene id symbol gene type direction distance location
lamp1 NA coding upstream 5946 20371424 ~ 20388362 (+)
cul4a cul4a,LOC102780633 coding upstream 30617 20335832 ~ 20363691 (+)
LOC103046697 NA coding upstream 70886 20314914 ~ 20323422 (+)
LOC103027637 LOC108429819 coding upstream 81551 20290648 ~ 20312757 (+)
LOC103046381 LOC108429788 coding upstream 106873 20281648 ~ 20287435 (+)
tmco3 tmco3 coding downstream 66372 20463644 ~ 20488290 (+)
tfdp1 tfdp1 coding downstream 97195 20494467 ~ 20513140 (+)
grk1 grk1,grk1a,LOC107748333 coding downstream 122088 20519360 ~ 20530018 (+)
cenpe LOC107577987 coding downstream 135130 20532402 ~ 20564585 (+)
tmem255b tmem255b coding downstream 168857 20566129 ~ 20593330 (+)
G105032 NA non-coding upstream 112822 20280714 ~ 20281486 (+)
G105018 NA non-coding upstream 150953 20242905 ~ 20243355 (+)
G105017 NA non-coding upstream 156060 20237850 ~ 20238248 (+)
G105008 NA non-coding upstream 188558 20203194 ~ 20205750 (+)
G105007 NA non-coding upstream 191369 20202635 ~ 20202939 (+)
G105074 gas6,LOC107571980,LOC107573434 non-coding downstream 221518 20618790 ~ 20620441 (+)
G105079 NA non-coding downstream 251824 20649096 ~ 20652261 (+)
G105235 NA non-coding downstream 358021 20755293 ~ 20755532 (+)
G105271 NA non-coding downstream 431096 20828368 ~ 20860880 (+)
G105270 NA non-coding downstream 474519 20871791 ~ 20909285 (+)
nfkbiz nfkbiz other upstream 649384 19734226 ~ 19744924 (+)
G104656 pcdh8 other upstream 1471105 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 2975170 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 3255335 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 3499716 16888386 ~ 16894592 (+)
G105276 NA other downstream 592001 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 621766 21019038 ~ 21028990 (+)
G105357 NA other downstream 929920 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 1857813 22255085 ~ 22283453 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other downstream 2127985 22525257 ~ 22588961 (+)

Expression


Co-expression Network