G105074 (gas6,LOC107571980,LOC107573434)


Basic Information

Item Value
gene id G105074
gene name gas6,LOC107571980,LOC107573434
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 20618790 ~ 20620441 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU141972
GCAATAAGGACGTTAAGGACACACGCGCATTTACGAACAATTAATAAATTGTGTATTAAAACTTCGTTTACCGTTTCAGGGTCGTTCTCAAACACTTCTCGCGCCTCTTCTTTTGTACATCTCTCctccacacattctctctccAAGTGTCCTTGTTTGGTTTCCTCAAAAACCTGGTTCGCTCGTTTTGGTCTTCTTAAAAACTGGCTGGCTTCCTCAGGCGACAAGGACAGCTGCGAGGAGCAGGCGACGcacaggaggatgaagaaacaGCCCGAGAGAAACTCTCCCGGGGTAAGAAGCATGTTTGGTTCGGCAGCAGACTCAGGAAAGTTCCTCCAGTCCTggttctctccctcactctttctctttatttcttcttctttttttctgtgcagCTGAGAAAGCTTTCACTTCTCACAGCGGGGGAGAGTCTATACCGCTACATTCAACTCTCTCTACACGGCTTGCAGAGGCAGACGCATACCACAGCCCAGCTCCCTTTCTCTcctccacactcacacacacacacacactctctctcacacacactcacattcacacTAGCACGCTTACTCCC

Function

symbol description
gas6 Predicted to enable calcium ion binding activity. Acts upstream of or within sprouting angiogenesis. Predicted to be located in extracellular region. Is expressed in heart; nervous system; and neural tube. Orthologous to human GAS6 (growth arrest specific 6).

NR:

description
PREDICTED: growth arrest-specific protein 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141972 True 580 lncRNA 0.49 2 20618790 20620441

Neighbor

gene id symbol gene type direction distance location
tmem255b tmem255b coding upstream 25460 20566129 ~ 20593330 (+)
cenpe LOC107577987 coding upstream 54205 20532402 ~ 20564585 (+)
grk1 grk1,grk1a,LOC107748333 coding upstream 88772 20519360 ~ 20530018 (+)
tfdp1 tfdp1 coding upstream 105650 20494467 ~ 20513140 (+)
tmco3 tmco3 coding upstream 130500 20463644 ~ 20488290 (+)
LOC103029654 LOC108437114,LOC108258365 coding downstream 145301 20765742 ~ 20774329 (+)
LOC103029333 LOC108437114,LOC108258365 coding downstream 162629 20783070 ~ 20800531 (+)
gtf3c3 gtf3c3,LOC107750061 coding downstream 183613 20804054 ~ 20827275 (+)
LOC103031253 hecw2,LOC107676038,LOC108258347,LOC107674007,LOC107706834 coding downstream 240504 20860945 ~ 20908775 (+)
mdh1b NA coding downstream 324504 20944945 ~ 20957033 (+)
G105041 NA non-coding upstream 194215 20348319 ~ 20424575 (+)
G105044 NA non-coding upstream 221518 20394308 ~ 20397272 (+)
G105032 NA non-coding upstream 337304 20280714 ~ 20281486 (+)
G105018 NA non-coding upstream 375435 20242905 ~ 20243355 (+)
G105017 NA non-coding upstream 380542 20237850 ~ 20238248 (+)
G105079 NA non-coding downstream 28655 20649096 ~ 20652261 (+)
G105235 NA non-coding downstream 134852 20755293 ~ 20755532 (+)
G105271 NA non-coding downstream 207927 20828368 ~ 20860880 (+)
G105270 NA non-coding downstream 251350 20871791 ~ 20909285 (+)
G105275 NA non-coding downstream 277760 20898201 ~ 20899309 (+)
nfkbiz nfkbiz other upstream 873866 19734226 ~ 19744924 (+)
G104656 pcdh8 other upstream 1695587 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 3199652 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 3479817 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 3724198 16888386 ~ 16894592 (+)
G105276 NA other downstream 368832 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 398597 21019038 ~ 21028990 (+)
G105357 NA other downstream 706751 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 1634644 22255085 ~ 22283453 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other downstream 1904816 22525257 ~ 22588961 (+)

Expression


Co-expression Network