G105079


Basic Information

Item Value
gene id G105079
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 20649096 ~ 20652261 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU141983
GCGCGCTCTCACTGATCGATCAGATTCATCGATCTGCTACTCTAAACACGGCGCTGCTGAATAGTTTAATAGTGACGTAGTTCAGGATCTAACTAACCATAACTGTGATTCAGATTTAAGCCCACAGccctcagtaaactcagtaatcGGGTGTGTGGGACCGAGTGAGCAGCTCCCGCGCCCGTTATCCGCTGTCTGAGTGAGAGCAGCGTAAAGTCcgggtaaataaataaagcctgGCGGTAATGAATACTTACAGCGGTGGGCATCGCACACAGTCCAGACCAGCAGGAGGCTGGCCAGCGCCGCTCTCTCCCCCCTCATGTTCAGGCCTGAACCGCGGGCTCGGAGGGGCTTATGTCGCTGCTGGCTGAGTTTCTGGCCGGTGGGAGAACTTTTTATTCCCCTCACAGGAGTTTTTTTCGCTGCTTCAGCGAGGAGGTGCTGGGAGAGCGCCAACAGGCCAACAACCCGAGCGGCCAGAGAGGGCGCTGTTCCCCCGCCGCGCTCTGTCTCCTCACCGCCTCACAGCAACCCTGCAGTCAGCCAGCCATGTTGACCTACACTCATCTGTTGACTTTCATCTGCTCAACagccaccaaatattaattctgTTGTTTTTCATCC

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
TU141983 True 627 lncRNA 0.55 2 20649096 20652261

Neighbor

gene id symbol gene type direction distance location
tmem255b tmem255b coding upstream 55766 20566129 ~ 20593330 (+)
cenpe LOC107577987 coding upstream 84511 20532402 ~ 20564585 (+)
grk1 grk1,grk1a,LOC107748333 coding upstream 119078 20519360 ~ 20530018 (+)
tfdp1 tfdp1 coding upstream 135956 20494467 ~ 20513140 (+)
tmco3 tmco3 coding upstream 160806 20463644 ~ 20488290 (+)
LOC103029654 LOC108437114,LOC108258365 coding downstream 113481 20765742 ~ 20774329 (+)
LOC103029333 LOC108437114,LOC108258365 coding downstream 130809 20783070 ~ 20800531 (+)
gtf3c3 gtf3c3,LOC107750061 coding downstream 151793 20804054 ~ 20827275 (+)
LOC103031253 hecw2,LOC107676038,LOC108258347,LOC107674007,LOC107706834 coding downstream 208684 20860945 ~ 20908775 (+)
mdh1b NA coding downstream 292684 20944945 ~ 20957033 (+)
G105074 gas6,LOC107571980,LOC107573434 non-coding upstream 28655 20618790 ~ 20620441 (+)
G105041 NA non-coding upstream 224521 20348319 ~ 20424575 (+)
G105044 NA non-coding upstream 251824 20394308 ~ 20397272 (+)
G105032 NA non-coding upstream 367610 20280714 ~ 20281486 (+)
G105018 NA non-coding upstream 405741 20242905 ~ 20243355 (+)
G105235 NA non-coding downstream 103032 20755293 ~ 20755532 (+)
G105271 NA non-coding downstream 176107 20828368 ~ 20860880 (+)
G105270 NA non-coding downstream 219530 20871791 ~ 20909285 (+)
G105275 NA non-coding downstream 245940 20898201 ~ 20899309 (+)
G105300 cnppd1,LOC107549439,LOC107676054,LOC107750058 non-coding downstream 343498 20995759 ~ 20999373 (+)
nfkbiz nfkbiz other upstream 904172 19734226 ~ 19744924 (+)
G104656 pcdh8 other upstream 1725893 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 3229958 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 3510123 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 3754504 16888386 ~ 16894592 (+)
G105276 NA other downstream 337012 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 366777 21019038 ~ 21028990 (+)
G105357 NA other downstream 674931 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 1602824 22255085 ~ 22283453 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other downstream 1872996 22525257 ~ 22588961 (+)

Expression


Co-expression Network