G105270


Basic Information

Item Value
gene id G105270
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 20871791 ~ 20909285 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU142285
aaaaaaaatatatataaaaaaaaaaaaaaaaaaaacacttgaACTTGATCAGATTGTTTGGCTCATCATAGCGTGCctagatcagatcagatcagaacaGACAGGTCCAACCCACGCTTCTCTCATTTGACTGAATTTGTTTCACGCCATTACAGTTCCATATTTATACTTGCACTAAGTGTACCAAAGGTTTAGGGACAGCTTGGGATGTCCTAATCTTCCTCTCTTTGTGGTTGTTTGACGATGAGCATAGAGTTTCACGTTTCTTTTATCACTCAGACGTCCCTTCATCGTTTTCTTGAATTTACCATTGTGCTACAATTtgtatcacagttttttcatctGAAATGACTATGTGAAAGTACTATGTTGAGTTACATAGTGGcttactttttctttctccagcAGGATATGTTCGAttgcttaaataaatgaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142285 True 437 lncRNA 0.35 3 20871791 20909285

Neighbor

gene id symbol gene type direction distance location
gtf3c3 gtf3c3,LOC107750061 coding upstream 44516 20804054 ~ 20827275 (+)
LOC103029333 LOC108437114,LOC108258365 coding upstream 71260 20783070 ~ 20800531 (+)
LOC103029654 LOC108437114,LOC108258365 coding upstream 97462 20765742 ~ 20774329 (+)
tmem255b tmem255b coding upstream 278461 20566129 ~ 20593330 (+)
cenpe LOC107577987 coding upstream 307206 20532402 ~ 20564585 (+)
mdh1b NA coding downstream 35660 20944945 ~ 20957033 (+)
nrp2 nrp2,nrp2a,LOC107556288,LOC107750056,LOC107749808 coding downstream 508151 21417436 ~ 21561654 (+)
LOC103037976 LOC103037976,LOC108437127 coding downstream 702287 21611572 ~ 21616436 (+)
LOC103035679 NA coding downstream 1017064 21926349 ~ 21934395 (+)
LOC103046323 LOC108441470 coding downstream 1403941 22313226 ~ 22480428 (+)
G105271 NA non-coding upstream 10911 20828368 ~ 20860880 (+)
G105235 NA non-coding upstream 116259 20755293 ~ 20755532 (+)
G105079 NA non-coding upstream 219530 20649096 ~ 20652261 (+)
G105074 gas6,LOC107571980,LOC107573434 non-coding upstream 251350 20618790 ~ 20620441 (+)
G105041 NA non-coding upstream 447216 20348319 ~ 20424575 (+)
G105300 cnppd1,LOC107549439,LOC107676054,LOC107750058 non-coding downstream 86474 20995759 ~ 20999373 (+)
G105303 NA non-coding downstream 90854 21000139 ~ 21004638 (+)
G105305 NA non-coding downstream 94460 21003745 ~ 21005854 (+)
G105311 NA non-coding downstream 103898 21013183 ~ 21015484 (+)
G105363 NA non-coding downstream 301448 21210733 ~ 21210986 (+)
nfkbiz nfkbiz other upstream 1126867 19734226 ~ 19744924 (+)
G104656 pcdh8 other upstream 1948588 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 3452653 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 3732818 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 3977199 16888386 ~ 16894592 (+)
G105276 NA other downstream 79988 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 109753 21019038 ~ 21028990 (+)
G105357 NA other downstream 417907 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 1345800 22255085 ~ 22283453 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other downstream 1615972 22525257 ~ 22588961 (+)

Expression


Co-expression Network