G105276


Basic Information

Item Value
gene id G105276
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 20989273 ~ 21055483 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU142294
TATTTGTCTCTTCAAATATTCttccaaaacaacaactttcCACTTCAGAACAAAAAGAGCAAATTCAACAATCAAAAAAGGTGGTTAGATAACTCACTCCTGTAAATCAGAACCTGCAACAACGCTTTCTTTAAGcaaacaaacaccaaacaacTCACACACCACCTGCTCCTACCTTTAACCCTCTGCAGTTAGCTTGTATTGAACTGATGGGCCTGACAGCTAGCTAGCCGGATAACTTTAGCCAAAGGTCAAGGCAGTCTAAGAAGGTCAGGAATTATCAGATGGTCACTTTTCTCTTGAAGTTAAGCTTGcataattacctttgtttaacTCTATGTAACATGGGTTACCACTGGAAcaatgaggctaatgtagctaacagcaATGGAATCTTAGAGCTACCAAATTAGCACCGTGCCTAAACCAGTACACACATAGGTCACTAGATAGGTCTTTCACAGAGTCTACAAAATATTActgaaaatatatgtattacaaAATTCTTGAAGCATCTTCAATTActtgttagccacattagctAGGAACAGAGAAACATTTAGACAGAAACAAGTCTTGACTGTGtgcaagtaaaaataaaaatcctgcaagttttaaaaaatatatttagctcTCTGGAAAGCCCTTCTTTAGTCAAAAACACCCCTAACATCACCATCAACTTAGCAGTAGCCTAGTCTACTTATAAATAGCATGGTAACTTGTAATGCCAACACCACTGACCAGTTTtttgccaaaaaacaaaacaaaaacaatatttcacTTGGATCACATTTGCACTTTGTTGTCAAATGTATCTCAAGTTAATCAGACTGAAATCAGGTCAGCCTTTTTCTGTGTCGTGCTGAACGAGGCTGCAGTCTTAAGATTCACAACTTTAAGTAAAAGAAGCATTTTGTCCGCAACCATATAGACCCTCTATAATCGTCTTCCTCACCCACAAGAATCACATGCCCAATAACAAGTTTACTCTGTCAAATGCCTCTTCGGCCCCATCCACACACATCCAGAtcaattttatatgaatttaaaggaaaatatttCCATCCACACTGAGATGAAAATGCTTGCACAAGCATGTGAGATCTGTATTAACTctcaaagaaaaagtaaaagaacatAGAGGTTTAAATTACACACTACTACTCCCTAAGTAGTGTACTGTGCAGGTCACAAAATTACAGATTCTAACTTGAACAGagcattatatatttgtaataaaagtgtatttacatttatttatgttaaaatcTGAAATCTAGTGATATCTGCATGCAGACACTGTAGTTTTATGCTGTTCACTAAATAAGAAGTAAGAACTCTTTGAGGACTTTTAGACAGTGGCATTTTTTGTGCGAAGCTGAACTGGCCGTGACTGTGGAATAACTTTCAAAGACTTTCTAATGAGGTGAACTATACTTAATGACTTATTTCAGTTTTGAAAATGAGTTGTAAAGGACCATACaatgatctttaaaaaaaaaaaaaaacattcaagctTAATCCTCATCttattctttatcttttttttattttgcgcACCTTAATATTTGTATCATTAGCCTATTGCAGTGGTTCTTGTGAACATCCGTTCTGCATATACTGGTGTTTTTACTGCTTATAGCACACCCACGGGGCATTTTACAAAGCATTTCACAGCTTAACCAGATAACTACCTTGTCTGAAAGAAAAATAGTTGGCTATCTGAGGgcttttcacacctgtagtttgtttctttgttaagGAATTTGATTCTCTGTTAATGAATTCGATTCTCTGTGGATGAGTTAGTTtgtacttggagcgttttctccaaCCAACCATATTATTCTccctcggtttggtttgttttcgcACAGGCACCTAAATCATGAAAGCatgttgtctcctctgattggtcagtgcTGTCTGGCGCGGGAGCATAAATACAGCAAGAAGGTCCtgtgtaaattaaaataacatatcGGACAgttgggtcagatcgagaccggAAACCACAAACAAACCGCTTTGGAGTTAGTCTGGGACCAGACCAAGAACACCTCCTTTAGCGGGTCTTGTTATAGTTGTTTTAGTCCACACCCAGGTGTGATTACTGATTTCACATCTGCTGAAACGAAACGCACCATAAGTGTAAATAAATCATAGTctgttttaactggaccaaatagtgctagTATGAAAATGCCCTGAGAAATCCTGCTTTGTAAAACACTTCATTCCAACTTGACTACATAGCCAACTAGAATGTGTGGGTTGAAATTATTATCTTGGAAGAATTAAAAACAGGAAATCACAATATATGCAGAAGGGAGAATGCCCCAAGAACCAGCGTTAAGAACATCTTACTGCCATGTCACTACTCTCTACTGCCATTGAGATCTAAGTGCTTTTAGAACCATTAGAAGGTTTTTACATTAAGAATTTTTTTCGATTGAGCAAGTCTAAAAGACGAGCAGGCTGTATTCCACAAGAACTGTCCGTGACCTAATCCGTGGGTTTGGCTGTGATTCTCTAACCAGGTACGAGGAGAGCTGGGGCTTTTCCAAAAGGCAGTGCAGTTTCAGGGCAACAAGAACGTCTCTGAAGGGTGGCCACAGTGATTAAAGGACCTTCACTGACCATAGCATTAGAAAGCCAAGGTGTGGCAAGCCAGGTGTACCAGGATGATTGATGGTCTGTGGAGACGTTACGAGACACACACTGCAAAGGAGAAAAAATGTCCAATCGGCCACAGCAGAAGAACGGTGGGTCGGTGCAGCCCTGCAGTTGGACCTGTGGTGAGGGGTTGGAAGAGCCTAGAGCCGAGAAGAGAGTGccaaaaacagagaaagctgAGTCCTGATAGTAAGGAGAGTGTGAAGACGGGCTGTGATGCTGGTGGTGCAAATCAGGTGCAATGGGAACACGGGGTTTTTGGCTTTCATTGCCCAAGACACAGCAGCGAGGAGGAGAAGCTGCAGCAGGGGTGTGAGACTGGATGCTGGAGATGTGTCCAGAGGGCTGGACAAGGGCTGGGTCCATTACGTCGACTTGGCCAAGAGGAGCGCGAGTAGCATTTGGCTGGCTAAGCTGGTGCACAACAGCTGAGCCTGCGATGAGTCCAGCCACACTGGTCAAGTAAAGCAAACCCAGCATGCATGAGACCTGCAGAAAG
>TU142295
TATTTGTCTCTTCAAATATTCttccaaaacaacaactttcCACTTCAGAACAAAAAGAGCAAATTCAACAATCAAAAAAGGTGGTTAGATAACTCACTCCTGTAAATCAGAACCTGCAACAACGCTTTCTTTAAGcaaacaaacaccaaacaacTCACACACCACCTGCTCCTACCTTTAACCCTCTGCAGTTAGCTTGTATTGAACTGATGGGCCTGACAGCTAGCTAGCCGGATAACTTTAGCCAAAGGTCAAGGCAGTCTAAGAAGGTCAGGAATTATCAGATGGTCACTTTTCTCTTGAAGTTAAGCTTGcataattacctttgtttaacTCTATGTAACATGGGTTACCACTGGAAcaatgaggctaatgtagctaacagcaATGGAATCTTAGAGCTACCAAATTAGCACCGTGCCTAAACCAGTACACACATAGGTCACTAGATAGGTCTTTCACAGAGTCTACAAAATATTActgaaaatatatgtattacaaAATTCTTGAAGCATCTTCAATTActtgttagccacattagctAGGAACAGAGAAACATTTAGACAGAAACAAGTCTTGACTGTGtgcaagtaaaaataaaaatcctgcaagttttaaaaaatatatttagctcTCTGGAAAGCCCTTCTTTAGTCAAAAACACCCCTAACATCACCATCAACTTAGCAGTAGCCTAGTCTACTTATAAATAGCATGGTAACTTGTAATGCCAACACCACTGACCAGTTTtttgccaaaaaacaaaacaaaaacaatatttcacTTGGATCACATTTGCACTTTGTTGTCAAATGTATCTCAAGTTAATCAGACTGAAATCAGGTCAGCCTTTTTCTGTGTCGTGCTGAACGAGGCTGCAGTCTTAAGATTCACAACTTTAAGTAAAAGAAGCATTTTGTCCGCAACCATATAGACCCTCTATAATCGTCTTCCTCACCCACAAGAATCACATGCCCAATAACAAGTTTACTCTGTCAAATGCCTCTTCGGCCCCATCCACACACATCCAGAtcaattttatatgaatttaaaggaaaatatttCCATCCACACTGAGATGAAAATGCTTGCACAAGCATGTGAGATCTGTATTAACTctcaaagaaaaagtaaaagaacatAGAGGTTTAAATTACACACTACTACTCCCTAAGTAGTGTACTGTGCAGGTCACAAAATTACAGATTCTAACTTGAACAGagcattatatatttgtaataaaagtgtatttacatttatttatgttaaaatcTGAAATCTAGTGATATCTGCATGCAGACACTGTAGTTTTATGCTGTTCACTAAATAAGAAGTAAGAACTCTTTGAGGACTTTTAGACAGTGGCATTTTTTAGTGTGAATGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142294 True 3178 TUCP 0.41 2 20989273 20992812
TU142295 False 1384 lncRNA 0.36 2 20989273 21055483

Neighbor

gene id symbol gene type direction distance location
mdh1b NA coding upstream 32240 20944945 ~ 20957033 (+)
LOC103031253 hecw2,LOC107676038,LOC108258347,LOC107674007,LOC107706834 coding upstream 80498 20860945 ~ 20908775 (+)
gtf3c3 gtf3c3,LOC107750061 coding upstream 161998 20804054 ~ 20827275 (+)
LOC103029333 LOC108437114,LOC108258365 coding upstream 188742 20783070 ~ 20800531 (+)
LOC103029654 LOC108437114,LOC108258365 coding upstream 214944 20765742 ~ 20774329 (+)
nrp2 nrp2,nrp2a,LOC107556288,LOC107750056,LOC107749808 coding downstream 361953 21417436 ~ 21561654 (+)
LOC103037976 LOC103037976,LOC108437127 coding downstream 556089 21611572 ~ 21616436 (+)
LOC103035679 NA coding downstream 870866 21926349 ~ 21934395 (+)
LOC103046323 LOC108441470 coding downstream 1257743 22313226 ~ 22480428 (+)
LOC111193458 NA coding downstream 1453963 22509446 ~ 22517576 (+)
G105270 NA non-coding upstream 79988 20871791 ~ 20909285 (+)
G105275 NA non-coding upstream 89964 20898201 ~ 20899309 (+)
G105271 NA non-coding upstream 128393 20828368 ~ 20860880 (+)
G105235 NA non-coding upstream 233741 20755293 ~ 20755532 (+)
G105079 NA non-coding upstream 337012 20649096 ~ 20652261 (+)
G105363 NA non-coding downstream 155250 21210733 ~ 21210986 (+)
G105409 NA non-coding downstream 536359 21591842 ~ 21592052 (+)
G105456 NA non-coding downstream 612369 21667852 ~ 21668149 (+)
G105470 NA non-coding downstream 772341 21827824 ~ 21833705 (+)
G105479 NA non-coding downstream 842493 21897976 ~ 21900325 (+)
nfkbiz nfkbiz other upstream 1244349 19734226 ~ 19744924 (+)
G104656 pcdh8 other upstream 2066070 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 3570135 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 3850300 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 4094681 16888386 ~ 16894592 (+)
G105357 NA other downstream 271709 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 1199602 22255085 ~ 22283453 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other downstream 1469774 22525257 ~ 22588961 (+)
LOC103038624 zgc:77849,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708,LOC107564565 other downstream 1754596 22810079 ~ 22820096 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other downstream 2860152 23915635 ~ 23923771 (+)

Expression


Co-expression Network