G105300 (cnppd1,LOC107549439,LOC107676054,LOC107750058)


Basic Information

Item Value
gene id G105300
gene name cnppd1,LOC107549439,LOC107676054,LOC107750058
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 20995759 ~ 20999373 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU142333
GGAGCTTTCGGATCGGGCTTGGGGCAGATTTCTGGAGCAATTCAACAGCAATATCAGTCACAGGACAGGAGAGGGAGTCCAGGGAAGTGTCCGGATCAAGGCCATAGTACAAACGCTTCCTAACGCGATCAGCAAGCTGCTGGTGTCCCGGGagaaaCGTAAACTCTTGAAAGTCCGAGAATGGAAACGTCCGCTCGTCGaataaatcccccaaatccatGTTGTAACGGTAAAAGACGATTTTAAAGACTGTTAAACCCTGGTAAACATGTAGAAAGGCGTCTCTGGGCGCCTCCACTCCTCTACAGCCACTGAAGGGaaggagctaaagctaaagctaacagCCTCACCTCCCTCCCTCAGTTACAGCTGTTAACCCGTTACTGCCCGACCTGCTCCCTCTGCTCAGCTGGAAACTGGA

Function

symbol description
cnppd1 Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex. Predicted to be active in nucleus. Orthologous to human CNPPD1 (cyclin Pas1/PHO80 domain containing 1).

NR:

description
PREDICTED: protein CNPPD1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142333 True 421 lncRNA 0.51 3 20995759 20999373

Neighbor

gene id symbol gene type direction distance location
mdh1b NA coding upstream 38726 20944945 ~ 20957033 (+)
LOC103031253 hecw2,LOC107676038,LOC108258347,LOC107674007,LOC107706834 coding upstream 86984 20860945 ~ 20908775 (+)
gtf3c3 gtf3c3,LOC107750061 coding upstream 168484 20804054 ~ 20827275 (+)
LOC103029333 LOC108437114,LOC108258365 coding upstream 195228 20783070 ~ 20800531 (+)
LOC103029654 LOC108437114,LOC108258365 coding upstream 221430 20765742 ~ 20774329 (+)
nrp2 nrp2,nrp2a,LOC107556288,LOC107750056,LOC107749808 coding downstream 418063 21417436 ~ 21561654 (+)
LOC103037976 LOC103037976,LOC108437127 coding downstream 612199 21611572 ~ 21616436 (+)
LOC103035679 NA coding downstream 926976 21926349 ~ 21934395 (+)
LOC103046323 LOC108441470 coding downstream 1313853 22313226 ~ 22480428 (+)
LOC111193458 NA coding downstream 1510073 22509446 ~ 22517576 (+)
G105270 NA non-coding upstream 86474 20871791 ~ 20909285 (+)
G105275 NA non-coding upstream 96450 20898201 ~ 20899309 (+)
G105271 NA non-coding upstream 134879 20828368 ~ 20860880 (+)
G105235 NA non-coding upstream 240227 20755293 ~ 20755532 (+)
G105079 NA non-coding upstream 343498 20649096 ~ 20652261 (+)
G105303 NA non-coding downstream 766 21000139 ~ 21004638 (+)
G105305 NA non-coding downstream 4372 21003745 ~ 21005854 (+)
G105311 NA non-coding downstream 13810 21013183 ~ 21015484 (+)
G105363 NA non-coding downstream 211360 21210733 ~ 21210986 (+)
G105409 NA non-coding downstream 592469 21591842 ~ 21592052 (+)
nfkbiz nfkbiz other upstream 1250835 19734226 ~ 19744924 (+)
G104656 pcdh8 other upstream 2072556 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 3576621 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 3856786 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 4101167 16888386 ~ 16894592 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 19665 21019038 ~ 21028990 (+)
G105357 NA other downstream 327819 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 1255712 22255085 ~ 22283453 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other downstream 1525884 22525257 ~ 22588961 (+)
LOC103038624 zgc:77849,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708,LOC107564565 other downstream 1810706 22810079 ~ 22820096 (+)

Expression


Co-expression Network