G105303


Basic Information

Item Value
gene id G105303
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 21000139 ~ 21004638 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU142336
gtttacttttattgttgataattatggattacagccaataaatAATAAGAGCAATAGATGGTCACGTGGTCTGAAATGATAAACCCAGCATGCCTAGTGCATACGGTACAAACCTGTGGGAGCAGTGCTGTGATCTGGGGTTGCtgtagttggtcaggtctaggttcagcaacattaTGTGCCCAAAAGAATGAAGTCAACTGACTACCTGAATGTACTGAatgaccaggttattccatcaatagatttttcttttctgatgCCAGACTTCATTTATCTGAGACAAGTCTTTGTCTCTGTAGGTAGTCCTGCTCTGGAGTTTGAGGTGGATGTAGTCCTGCTCATGCAGCAGACTCCATATTACTGGGAATGGTGGGTCTCTACCTCTACAACAAGACTATTACACAACCCcattgcaaaaagaaaaaaaagacaagaaaactaGAAGgacataaaagaaaagaaacagaaaaatgtggagttttttgtgtttatttaacttgtttatcttgtaaaataaaaatagattgcAAACACAAGTATACTGAATGTTCACATCCAACAactaaataagtatttttaataaagccaAACATGAATTTGTTCAGTATACATAGTGTATAATGGAGAGTCAAGAGTGTATAATATCTAAAGCAGGCAGTCTTTTTTTTAGAAGCATGTTCCTGTTGTGAAGATgtgtgagcaggtcatttaaTAAGCAATATTTAGAGATTATTTAAGTGTCTACGGTGCTCATACTTGTACAGTGGCGTGATAAAGTTTTTGCCTTCatacagatttctttagtttttacatttttgtcat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142336 True 825 lncRNA 0.36 2 21000139 21004638

Neighbor

gene id symbol gene type direction distance location
mdh1b NA coding upstream 43106 20944945 ~ 20957033 (+)
LOC103031253 hecw2,LOC107676038,LOC108258347,LOC107674007,LOC107706834 coding upstream 91364 20860945 ~ 20908775 (+)
gtf3c3 gtf3c3,LOC107750061 coding upstream 172864 20804054 ~ 20827275 (+)
LOC103029333 LOC108437114,LOC108258365 coding upstream 199608 20783070 ~ 20800531 (+)
LOC103029654 LOC108437114,LOC108258365 coding upstream 225810 20765742 ~ 20774329 (+)
nrp2 nrp2,nrp2a,LOC107556288,LOC107750056,LOC107749808 coding downstream 412798 21417436 ~ 21561654 (+)
LOC103037976 LOC103037976,LOC108437127 coding downstream 606934 21611572 ~ 21616436 (+)
LOC103035679 NA coding downstream 921711 21926349 ~ 21934395 (+)
LOC103046323 LOC108441470 coding downstream 1308588 22313226 ~ 22480428 (+)
LOC111193458 NA coding downstream 1504808 22509446 ~ 22517576 (+)
G105300 cnppd1,LOC107549439,LOC107676054,LOC107750058 non-coding upstream 766 20995759 ~ 20999373 (+)
G105270 NA non-coding upstream 90854 20871791 ~ 20909285 (+)
G105275 NA non-coding upstream 100830 20898201 ~ 20899309 (+)
G105271 NA non-coding upstream 139259 20828368 ~ 20860880 (+)
G105235 NA non-coding upstream 244607 20755293 ~ 20755532 (+)
G105311 NA non-coding downstream 8545 21013183 ~ 21015484 (+)
G105363 NA non-coding downstream 206095 21210733 ~ 21210986 (+)
G105409 NA non-coding downstream 587204 21591842 ~ 21592052 (+)
G105456 NA non-coding downstream 663214 21667852 ~ 21668149 (+)
G105470 NA non-coding downstream 823186 21827824 ~ 21833705 (+)
nfkbiz nfkbiz other upstream 1255215 19734226 ~ 19744924 (+)
G104656 pcdh8 other upstream 2076936 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 3581001 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 3861166 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 4105547 16888386 ~ 16894592 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 14400 21019038 ~ 21028990 (+)
G105357 NA other downstream 322554 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 1250447 22255085 ~ 22283453 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other downstream 1520619 22525257 ~ 22588961 (+)
LOC103038624 zgc:77849,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708,LOC107564565 other downstream 1805441 22810079 ~ 22820096 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G305727 NA unknown NC_047614.1 CM018560.1 11111739 ~ 11112518 (+)