G105312 (abcb6,abcb6a,LOC107556273,LOC107750068)


Basic Information

Item Value
gene id G105312
gene name abcb6,abcb6a,LOC107556273,LOC107750068
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 21019038 ~ 21028990 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU142348
TCTGTATATGTTcaaattcttttttctttttaaaattagtgGGTTCATCTTACATTCAGGTGTGCTCAATAGCCTGGATATTATAGTACACACAGCCTATTTGGAAAGACAATGGAGGAAGTTCCTGTTTTACCTCATCCAGTAGGATAATCTGGGGGGCTTTAAGGATTGTGCGAGCAATGGCCACCCTCTGCTTCTCTCCTCCGCTCAGTTTTAGACCCCTCTCGCCAACTTGAGTGGtgtatcCTTCAGGGAAGGACAGAATCCTCTCATGAATGTCAGCGGCCATGGCTGCCTCCTCCACTTCCTCGTCGGTGGCAGAGACTCTGCCGTAGCGGACGTTTTCACGGATGTTGTCGTTGAACAGGACAGTGTCCTGAGGGACGACCCCAATGTGTGCCCTCAAGGAGTCCTGCTTGACCTTGGCAATGTCTTGTCCATCAATGCGGATGCAACCACCCTGAACATCATAGAACCGGAAGAGCAGTCGAATGATGGTGCTCTTCCCAGAGCCTGACTGGCCAACAAGTGCAACAGTCTGGCCTGGCAGGACGGTGAAAGAGACGTCCTTCAGAATCTCCTTCCCTTCAGTGTAGCTGAAGAAGACATTCTCGAACTCAATCCTCCCTTGCCTGTAGTTCAGGTTTCCCGCGTTCACGTCATCTTTTACCTCCTGTTCCTCTGTGAAGAGCTGGAACATGTTCTCCATGTCAATGAAAGACCTCTGGATCACCCTGTAGTACGTTCCAAACCAGTTGAGTGGTGTGTAAAGCTGGAGGATGTACGTTCCGAACAGAACATAATCTCCCACCTCGAATTTGCCCTCTGTGACAAAGTAAGCACAAAGCAGTGAGCCGGCCAGCAGACCCGAGCCGATGATCAGATTCTGCGTCTGGTTTAACAAAGCCAGCGAGGCGTTGGTCTTCCACTCCAACAGCTGGTACTTCTGGATTGCTTCCTCAAAGCGTCCTACTTCATAACTCTCTGCGTTGTAGTATTTCACCGTCTCGAAGTTTAGCAGGGAGTCCACTGCTTTGGCCTTGGCGTTGTTATCATGAGTGTTCATGTCTCGCCTGTACTTGGTCCTCCATTCAGTGATTATAATGGTAAGAGTGAGATAAAGGGCCATGCAGACGAAGGTGATGAGACCAAACCAGGCATTGAAGTAGGAGATGAAGTAGATGATGGCTATGACTATGTCAGCT

Function

symbol description
abcb6a Predicted to enable ABC-type heme transporter activity and heme binding activity. Acts upstream of or within iris morphogenesis and melanocyte proliferation. Predicted to be located in membrane. Predicted to be active in vacuolar membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in dyschromatosis universalis hereditaria. Orthologous to human ABCB6 (ATP binding cassette subfamily B member 6 (Langereis blood group)).
abcb6 Enables several functions, including ABC-type heme transporter activity; ATP binding activity; and heme binding activity. Involved in several processes, including cellular detoxification of cadmium ion; melanosome assembly; and porphyrin-containing compound metabolic process. Located in several cellular components, including Golgi apparatus; bounding membrane of organelle; and extracellular exosome. Is integral component of mitochondrial outer membrane. Implicated in dyschromatosis universalis hereditaria.

NR:

description
probable ATP-dependent RNA helicase DDX41

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142348 True 1205 TUCP 0.49 11 21019038 21028990

Neighbor

gene id symbol gene type direction distance location
mdh1b NA coding upstream 62005 20944945 ~ 20957033 (+)
LOC103031253 hecw2,LOC107676038,LOC108258347,LOC107674007,LOC107706834 coding upstream 110263 20860945 ~ 20908775 (+)
gtf3c3 gtf3c3,LOC107750061 coding upstream 191763 20804054 ~ 20827275 (+)
LOC103029333 LOC108437114,LOC108258365 coding upstream 218507 20783070 ~ 20800531 (+)
LOC103029654 LOC108437114,LOC108258365 coding upstream 244709 20765742 ~ 20774329 (+)
nrp2 nrp2,nrp2a,LOC107556288,LOC107750056,LOC107749808 coding downstream 388446 21417436 ~ 21561654 (+)
LOC103037976 LOC103037976,LOC108437127 coding downstream 582582 21611572 ~ 21616436 (+)
LOC103035679 NA coding downstream 897359 21926349 ~ 21934395 (+)
LOC103046323 LOC108441470 coding downstream 1284236 22313226 ~ 22480428 (+)
LOC111193458 NA coding downstream 1480456 22509446 ~ 22517576 (+)
G105311 NA non-coding upstream 3554 21013183 ~ 21015484 (+)
G105305 NA non-coding upstream 13184 21003745 ~ 21005854 (+)
G105303 NA non-coding upstream 14400 21000139 ~ 21004638 (+)
G105300 cnppd1,LOC107549439,LOC107676054,LOC107750058 non-coding upstream 19665 20995759 ~ 20999373 (+)
G105270 NA non-coding upstream 109753 20871791 ~ 20909285 (+)
G105363 NA non-coding downstream 181743 21210733 ~ 21210986 (+)
G105409 NA non-coding downstream 562852 21591842 ~ 21592052 (+)
G105456 NA non-coding downstream 638862 21667852 ~ 21668149 (+)
G105470 NA non-coding downstream 798834 21827824 ~ 21833705 (+)
G105479 NA non-coding downstream 868986 21897976 ~ 21900325 (+)
nfkbiz nfkbiz other upstream 1274114 19734226 ~ 19744924 (+)
G104656 pcdh8 other upstream 2095835 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 3599900 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 3880065 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 4124446 16888386 ~ 16894592 (+)
G105357 NA other downstream 298202 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 1226095 22255085 ~ 22283453 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other downstream 1496267 22525257 ~ 22588961 (+)
LOC103038624 zgc:77849,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708,LOC107564565 other downstream 1781089 22810079 ~ 22820096 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other downstream 2886645 23915635 ~ 23923771 (+)

Expression


Co-expression Network