G105479


Basic Information

Item Value
gene id G105479
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 21897976 ~ 21900325 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU142563
caaacaaacaattaagaaCCTTTATTTTCAGGAGTGTACGacctaaacttaaaaaagttaataacTGCCTATATATGTAAGCTTTGTTTTCAAAGCACTTGTGGTATTTCACATGGACACAAcacttaaataaaagaatatgatactacagataaaaaaaaaaaaaacattagtctttttactgtttacacaAAGCAAACAGTGTAGAGTAAACGATAACTCAAGAgacatccctctctcttttatgGCAGGAGGGAGAGGGGCCCTCTATTGGCAGTGGCAGAGAAGAGCATGTTCTATCAAAGCTCTGAGCTTAATTTCAGTTGtttgttttgatattttaaaagtatttataaaacccactttccttttttcttttaaacggataaaatgttttttgtatgttttttttacataatgctGTACATCTTTCCCTTAAAACATGTGTCTTGTTGCAGGTAACACTGCCTTATTAGGTTCTTCACAGGTCCAGGCGTAATTTGTATAAAACATCTAAGGGAAAAAGGGCTGATCTGCGATCAGTTTTGGTGTTTCATGTCTTAGTTGACCCATTCAAGCTCAACACAGACAGAATATTGAGCATTGTTTTGTAGGAGATGTATGCGCTTTACAGGACATTACCAAAAACCTTATTCAGTCTAATACGAAGCTGCAATGTCAAAATACGCAAATTTACAATCAAAAATTTTGTAACCGCCTGAGAGACTGTGGAAACACCACTGACCATAACACATACCATGCAGTTACACCAATAACCTATAATTACTCTCCATTTGTTTGTGTAATTACTGTtacatatgtttatttttatttggcatggtttgtattgtattttacgTATATTATGAGAGACAGTGGCAGAGTAACACtctccatactgttacaccactgacacatTATACATGCTGCAgtattacaccactgacccaaaCAGACTCTCTGTAATGTATTGCCCTAATCCATAATAAACTACACCGTGTAACATCactaaaataatgcaattcAGAATATAACACTGCAGACTGaaatgcagtttacagtgtaacaccactgactgttagggtggtgtttaaaaaaaatctaatcaaatgtatctttaataaatgatccgatatttttcttcaaataaaccCAAGATCGATCCTTAGAAATAACCTAGACTTAGCATCTGTTTGACTGGTTGCCTTTCTGTGTGTAAAATTCACTATTTCACATGCATCTggtgtagcactgctgaggaaattCATGCTTTTATTGATTAAGCAAATGTTTGATTAGAATGACACTACTGAGGTAATTTATTACAAAactgcactactgaggtaataagctagctagctaaacatgtgagtaatttataattagaaatgcaatactgctgaggtaaatgttctttttttctctggtttgttgtatatatatatatatatttgtatttcagTTTTTCATTAGCCTGAATatgatttacatttttgtgGGTGGAGCTTGAACAGGTCAATCATCAAACatcattatacagtataatgaaCAAGCTGAACCCATATCAGCCCTTCCTCTCTGAGATGCTCATACACTTCATAACCACTTCTACAATCTACAGAATCATGTAAACAGACCCCCGATCTGTCCAGAAATAAGACCACCAGTGTCTCTATTCTGTTTGTCCTCTAATATTTCTACTTAAACtaatgtaagagtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgtcaccGGGCTGTGCTGGTCTGTTGATTGACAGGTGTATACAAGTACTTCCAGATGGCGTAGTAATGGATGCCTGCTCCCAAGGCAACGAAAAGGTGCCATATAGCATGAGCGAAGGGAACCACCCCATCACTTTTAAAGAACACCATCCCCAACACGTAACACCCGCCCCCAACCAACAGCTCACACAGACCCGACCTGTccgcctgagagagagagagataaagagaagagagagagagaagagagagagagatacagagaaagagagatacagagagaaagagaaataaagagatagagataaagtaagagatacagagaaagagagatacagagagagagagatacagagaaagagagatacagagagagagagagatacagagaatgagagatacagagagagagagatacaaagagaaagagaaataaagagatagagataaagtaagaaatacagagagaaacagacagggagcgagagagatacagagacagagagatacagagagagagatacagagagacagacacagaagacaga

Function

NR:

description
PREDICTED: uncharacterized protein LOC108264702

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142563 True 2296 lncRNA 0.37 3 21897976 21900325

Neighbor

gene id symbol gene type direction distance location
LOC103037976 LOC103037976,LOC108437127 coding upstream 281540 21611572 ~ 21616436 (+)
nrp2 nrp2,nrp2a,LOC107556288,LOC107750056,LOC107749808 coding upstream 336322 21417436 ~ 21561654 (+)
mdh1b NA coding upstream 940943 20944945 ~ 20957033 (+)
LOC103031253 hecw2,LOC107676038,LOC108258347,LOC107674007,LOC107706834 coding upstream 989201 20860945 ~ 20908775 (+)
gtf3c3 gtf3c3,LOC107750061 coding upstream 1070701 20804054 ~ 20827275 (+)
LOC103035679 NA coding downstream 26024 21926349 ~ 21934395 (+)
LOC103046323 LOC108441470 coding downstream 412901 22313226 ~ 22480428 (+)
LOC111193458 NA coding downstream 609121 22509446 ~ 22517576 (+)
alkbh5 alkbh5 coding downstream 692313 22592638 ~ 22599854 (+)
LOC103042026 mief2,LOC107725398,LOC107564637,LOC108258856,LOC107692671 coding downstream 700885 22601210 ~ 22616958 (+)
G105470 NA non-coding upstream 64271 21827824 ~ 21833705 (+)
G105456 NA non-coding upstream 229827 21667852 ~ 21668149 (+)
G105409 NA non-coding upstream 305924 21591842 ~ 21592052 (+)
G105363 NA non-coding upstream 686990 21210733 ~ 21210986 (+)
G105311 NA non-coding upstream 882492 21013183 ~ 21015484 (+)
G105484 NA non-coding downstream 17663 21917988 ~ 21920210 (+)
LOC103035373 NA non-coding downstream 52467 21952792 ~ 21960494 (+)
G105491 NA non-coding downstream 64419 21964744 ~ 21965537 (+)
G105501 NA non-coding downstream 90105 21990430 ~ 21992563 (+)
G105542 NA non-coding downstream 330682 22231007 ~ 22231320 (+)
G105357 NA other upstream 528772 21327192 ~ 21369204 (+)
G105276 NA other upstream 842493 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other upstream 868986 21019038 ~ 21028990 (+)
nfkbiz nfkbiz other upstream 2153052 19734226 ~ 19744924 (+)
G104656 pcdh8 other upstream 2974773 18919060 ~ 18923203 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 354760 22255085 ~ 22283453 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other downstream 624932 22525257 ~ 22588961 (+)
LOC103038624 zgc:77849,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708,LOC107564565 other downstream 909754 22810079 ~ 22820096 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other downstream 2015310 23915635 ~ 23923771 (+)
G106036 NA other downstream 2086882 23987207 ~ 23989592 (+)

Expression


Co-expression Network