G105501


Basic Information

Item Value
gene id G105501
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 21990430 ~ 21992563 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU142590
AGACGCCTTTTTGCGAGTGCAACTATTTAAGTCTTTGCCAATGAGTAACTGAGtaggtgtctcaatacttttgcccatataTAATGAGTTTGAGTGTGTATTTATCTATATACATGTACAGTACTGCAGTGCATGTATGTggtatacatatatgtattttattgtgtatttgtttctgtttatgtGTCTTAATGCATTTGTGGACGTCAATGATACAGAAAAGCAAGTGAAGGGGGGGAGCATGGAAATGATGACACAGTGGGATAGAGACCGACAAGCCAGTGGCAGATAGATGAGCCACAACTTCCCATCATATCTGCCCTCTTTTTTCACTcttgtctctccatctctctctctcctcccgtCCTGCTGACTGCTCTAATTAAAATCACTGGACTCGCGGTGAATGTGTCGGACACTTGGAGCCAGTGAGTGAACACCCgtgcgcacacacacacgcacacacacaataaaatgcTCTCTCACCGCTTCCCAGGCACAGACTCTCATTTTCACTATTGTAGCACAAGGCTTAAAGGTACAGACACTGTAGCATTTTTAAGTTCATTATCTGTCTGCTGCACCTGTGTTGTTATGGCTTATTATCACAGGAAGATAGAACAGATCTCATCAAGCTCATCAAACCAGAAAACACTTATAACAGAGGCCACTTGGCAGGTGAAAACACTCTGATTCTGAAATACAGGGTAATTGCTGGGGAATTATTTGGGTTCAACAACTGTGCAAATGGTCAGTAAACTGTGCCCAGCGCTTGGACCCAATAATTGCCACTCACAATGTGATTTAAAGCCTAGTGCTCAACTATCATAGTGTTcacagcagtgaaactgtgtgaTCACTGTGTGGAACTATTCAATGAACTACTGAAAAAAGAAATAGGAAGAGAAATTatagaaaattaagaaaattatattgcataaaaaaatattgctttcttttgttatttaaagTTCCATTGTCATTCAGTTGTTTTTCCATTAATTTTATAATgtgtagttgtggtctctagtgaATAAATGCCacgtgagctgttttttgtggggaaaaaagtgCCTTGGTGATTCAGTATAGAGGGGGAGAAACGATGGGATTTTGGCTttttctcatgaatattcataacaGCACTGCTACAACAGgaagatattttttaaagacatttttacactaataacactaatctttacaatgtcatatattactttacaacatgtgtaatgccttgctaagtgcagtttaaccactgatctagtcttagagtctctatAGAACGCAAAATctactggagatcctatgtaaaccttgTTACTTAGACAGAGGTaagtagtccaggtccagatttttactttaaactaGTGTCAACAGGACTGTTCTTATCATAGACACCGACCTATCTTaattgtactttgctggtggtgttcctccatatacaaattctaaccatttgttccttacctctgaattactgggcaaatattataacactgatgtgttatttgcacaaataacacaggaacgaactgccatgttgtttctagcgctgttagctcctatctgacgagaaaGTGCTGGTCCATGGCTTTAGCACTGCCCGTGGGCGGTCACGAAcgaaggtgggcgaggccatgaatacttactcacgggttgatgtaaacactgtgcttttcctgattaACTCATTTTTCTGAAACAATCACGTGTTTTTAGCTGCTGTTATGAATGAGTTTTGAACAGGTTTAAATACAAAAACCATAAAATACAGGTGTAGCAGATCAGGTTTCAACACACCGGCCTATGGTCACTGATCTATGCCTGGGAGACCAGATCACCCTCTCCTCCTCACTTATCACAGTATACACACAAAGCGCAGGTGTAGTACATGTACCATGTAGATGAGCTAGTGCAAAACTAGGACAACAGCGCATGTCACATGACCTGTGAGGTCATGCCATGACGCAATGGCACACCTGCCCTCTTGATGACCTCCACCATGTTGGAGGGGAAGTAGCCGACGCGGTCGTTCCCCGTCCGGTTGTCATGGATGCAGCCCTTCCACCGGCCGTCAGAGTGCTGCTCCAGGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142590 True 2100 lncRNA 0.41 2 21990430 21992563

Neighbor

gene id symbol gene type direction distance location
LOC103035679 NA coding upstream 56035 21926349 ~ 21934395 (+)
LOC103037976 LOC103037976,LOC108437127 coding upstream 373994 21611572 ~ 21616436 (+)
nrp2 nrp2,nrp2a,LOC107556288,LOC107750056,LOC107749808 coding upstream 428776 21417436 ~ 21561654 (+)
mdh1b NA coding upstream 1033397 20944945 ~ 20957033 (+)
LOC103031253 hecw2,LOC107676038,LOC108258347,LOC107674007,LOC107706834 coding upstream 1081655 20860945 ~ 20908775 (+)
LOC103046323 LOC108441470 coding downstream 320663 22313226 ~ 22480428 (+)
LOC111193458 NA coding downstream 516883 22509446 ~ 22517576 (+)
alkbh5 alkbh5 coding downstream 600075 22592638 ~ 22599854 (+)
LOC103042026 mief2,LOC107725398,LOC107564637,LOC108258856,LOC107692671 coding downstream 608647 22601210 ~ 22616958 (+)
LOC103042343 NA coding downstream 626467 22619030 ~ 22631714 (+)
G105491 NA non-coding upstream 24893 21964744 ~ 21965537 (+)
LOC103035373 NA non-coding upstream 29936 21952792 ~ 21960494 (+)
G105484 NA non-coding upstream 70220 21917988 ~ 21920210 (+)
G105479 NA non-coding upstream 90105 21897976 ~ 21900325 (+)
G105470 NA non-coding upstream 156725 21827824 ~ 21833705 (+)
G105542 NA non-coding downstream 238444 22231007 ~ 22231320 (+)
G105547 NA non-coding downstream 260813 22253376 ~ 22253613 (+)
G105580 NA non-coding downstream 416863 22409426 ~ 22466799 (+)
G105581 LOC103043780 non-coding downstream 495675 22488238 ~ 22490742 (+)
G105645 NA non-coding downstream 699088 22691651 ~ 22692463 (+)
G105357 NA other upstream 621226 21327192 ~ 21369204 (+)
G105276 NA other upstream 934947 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other upstream 961440 21019038 ~ 21028990 (+)
nfkbiz nfkbiz other upstream 2245506 19734226 ~ 19744924 (+)
G104656 pcdh8 other upstream 3067227 18919060 ~ 18923203 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 262522 22255085 ~ 22283453 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other downstream 532694 22525257 ~ 22588961 (+)
LOC103038624 zgc:77849,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708,LOC107564565 other downstream 817516 22810079 ~ 22820096 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other downstream 1923072 23915635 ~ 23923771 (+)
G106036 NA other downstream 1994644 23987207 ~ 23989592 (+)

Expression


Co-expression Network