G53131


Basic Information

Item Value
gene id G53131
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 4771212 ~ 4773730 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU60510
GCTGATAACACACTGGAAGGTCTCCCTCCTCTTTAGCCCGGAGGACACGGCGTCCATGATTTCCAACAAGAATGTCAAATTTGGACTCGTCTGACCATAGAACACTTTTTCACTTTGAAACAGACCATTTTAAATGAGCCTTGGCCCACAGGACACGATGGCGCTTCTGGACCGTGTTCACATATGGCTTCCTTTTTGCATGACAGAGCTTTAGTTGGCAACTGCAGATGGCACGGCGGATTGTGTTTACCGAGAGTGGTTTCTGGAAGTATTCCTGGGCCCATTTAGTAATGTCATTGACACAATCATGCCGATGTGTGATGCAGTATCGTCTGAGGGCCCGAAGACCACGGACATCCAATAAAGGTCTTCGGCCTTGTCCCTTACGCTCAGAGATTTCTCCAGTTTCTCTGAATCTTTTGATGATGTTATGCACTGTAGATGATGAGATTTGCAAAGCCTTTGCAATTTGATGTTGAGGAACATTGTTTTTAAAGTATTCCACAATCTTTTTACGCACTCTTTCACAGTTCTGCCCATCTTTACTTCTGAGAGACTCTGCCTCTCTAAAGGGGGTCGCACACCAGACGAGAAGCTCAGCGCTGCGCCTCGGACAACTCACAGGTATCGCACACCAGAAGCGCACATTATATACACGAGAGCTTAATTTTGAATTGACTCCTGATAGAAGAGCTGCGCGATGGGTGAGTTTTAAGTCGACAGGGAAACGTTACATATGCCTATGCTTTAATATTTCGCACTGAGGTTAGTGTACATGGAAAAATGGCACAACAGAGCAAAATGAAAGAAAAGGCTACATTTATTATACATTTTTTCCAATATTTTTAGACTTTACTCAAGCTGTTAAACTTACAATGTAAAACTAATCTATCTTGCAACACAGGATGAAGTCAGTATGTACATTAACGATGATTTGAGAGAAATATTTTGAACAACTTCCTGAGTCGTAGCTGGGCGCTGCGGACAGGTGCCCAATGTCGCCGCTGGTGTGCGTAGAAATGCGTTCGAATTTTAAAGACATGGCGCTGAGCTTCGCGTCCGGTGTGCGACCCCCTTAAGATATCCCTTTTATAGCTAATCATGTTACAGACCTGATATCAATTAACTTAATTAGTTGCTAGATGTTCTCCCAGCTGAATCTTTTCAAAATTTCTTGCTTTTTCAGCCATTTGCTGCCCCCATGACAACTTTTTTGAGACCTGTAGCAGGCATGAAATTTGAAATGAGCTCATTTTGTGCATAAAACTGTAAAATTTCTCCATTTAAACATTTGTTATGTTATCTATGTTCTATTGTGAATAAAATATTGGCTCATGTGATTTGAAAGTCTTTTAGTTTTCATTTTATTCAAATTTAAAAAAACGTCCCAGCTTTTCCAGAATTCGGGTTGTAGATCCATATGTGGGCTTATGAAATTATAAGCATATTAACCCATAATAATGACCATTTTAATGACAAATTATGGCAGGTATGTGTCTGTATGTTGTTTTACATTCGATTTAGTCACCATAAATCTCTTAACACCTGTTAACCTCAGATGCTGTTTACAGATTGTATTGTATGTGTCTTGTCATGTGAGATGGTTTGAGGTGTTTTCTTAACGTGTGTGTCTTCATGAGTTTGCCTGCAGCGTAGCTATGGTGTCATTAACATTCCAGCAGTCATAGCGGCACCGTTAACACTCCGCTACATGACGAGACAGCTCTGCCTGTACCTCTCTACCTGCTGCACTTTCTCTCTGAACGTCTCTCTTACTTTTCTCACACCCGCCTACACAAACAAATACATATAAACACATACCAACCTACATAACTAAGAAACTAAAACCGAAATATTTATTTTTGTTACATGTGGGTGTCAGTTCTGACTCATATCATTCTTGTGCTGTCATTTTGAGAGGACTTCTACAAACAAGTCATTTTTCACACCTTTTCATCTGCCTCTCTTGACAGATGCAAGACAGGTACACTTCAGGTAATTATCTGACTTGGGTTATGTGGTATGTTTTGGAAAGTGCTTGTTGTTTTGTGGTGTTGTACCAGTATTTGGCTGAAACGCCCTGACCGTTGGTAGGTGTGCTGGCCTGGTCTCTCTGTTTGCCTAAGGTTTATTTTAGTGCCGCATATTTTGCATTTATACCTGTAGGGCTGAGAAAAGGTAGTACTTGTTGATGGTGCTTTCAGGGGATCCACTCTGATGTAATCAGTCTCTGTGCCTACATGTTGTGCAGCGAGAGCCCTCTTGACTCTGAGCCAAGAATGTACTAAGAATGACAAATATTGAAACCATGGAGAGCAGTCATTTCATTAATGTGCAAAGTGTTAACCAGTGTATATATAAATATATACTGATGTTATCTCAATTTGTTGATCGATATCTCAGTGTGTGGTTTAAGTTAAGGCAATGTGTTCATCTAATGATGTTAACCGAGCGCTCTTGCAGACTTTGTAGAACCTGCTGCATAGAACCGCAGTTGCATGACTTAGTCTTGTAATCGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60510 True 2519 lncRNA 0.41 1 4771212 4773730

Neighbor

gene id symbol gene type direction distance location
CI01000009_04738315_04741396 RALB.S, RALBA, RALB.L, RALB coding downstream 28786 4738229 ~ 4742426 (-)
CI01000009_04196309_04197268 DNAJC28 coding downstream 573944 4196309 ~ 4197268 (-)
CI01000009_04069741_04071278 NA coding downstream 699608 4069714 ~ 4071604 (-)
CI01000009_04015167_04016764 NA coding downstream 754375 4015005 ~ 4016837 (-)
CI01000009_03791699_03858262 NCAM2 coding downstream 911978 3790698 ~ 3859234 (-)
CI01000009_04778332_04780190 NA coding upstream 4323 4778053 ~ 4786216 (-)
CI01000009_04888729_04895882 NA coding upstream 114467 4888197 ~ 4896479 (-)
CI01000009_04976520_04987680 NA coding upstream 202756 4976486 ~ 4987707 (-)
CI01000009_05046374_05094978 SEMA5B, SEMA5BA coding upstream 272570 5046300 ~ 5095973 (-)
CI01000009_05110455_05136845 NA coding upstream 336475 5110205 ~ 5138314 (-)
G53127 NA non-coding downstream 127 4763368 ~ 4771085 (-)
G53148 NA non-coding downstream 61780 4709228 ~ 4709432 (-)
G53143 NA non-coding downstream 66655 4704272 ~ 4704557 (-)
G53134 NA non-coding downstream 81878 4689095 ~ 4689334 (-)
G53124 NA non-coding downstream 90547 4680357 ~ 4680665 (-)
G53132 NA non-coding upstream 30708 4804438 ~ 4809769 (-)
G53133 NA non-coding upstream 46993 4820723 ~ 4830767 (-)
G53167 NA non-coding upstream 64732 4838462 ~ 4838771 (-)
G53173 NA non-coding upstream 73171 4846901 ~ 4847103 (-)
G53415 NA non-coding upstream 240165 5013895 ~ 5017158 (-)
G52828 NA other downstream 539743 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 1509255 3261038 ~ 3262843 (-)
CI01000009_02885473_02893975 NA other downstream 1871805 2883688 ~ 2893975 (-)
G52410 NA other downstream 2208679 2551724 ~ 2562533 (-)
G53515 NA other upstream 728665 5502395 ~ 5505248 (-)
G55814 NA other upstream 3652091 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 4084422 8856310 ~ 8860563 (-)
G59097 NA other upstream 7514487 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 9201658 13975099 ~ 13978614 (-)

Expression


Co-expression Network