G105547


Basic Information

Item Value
gene id G105547
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 22253376 ~ 22253613 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU142653
accaaacatgccaggattggtcaaaattcctaggactagtttgcaaaagtaggttttgcatattatgcaaattagcaaaaaatctatatagacggaagtgcatggtccaaattggaaagttgttggtattgacccaaggaatccatcaaaaaagaattttgaatgtaggtcttatggtttttgagttattgagaaaattgtgaaaaatgaatttccttgtttatagcgccaccacttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142653 True 238 lncRNA 0.34 1 22253376 22253613

Neighbor

gene id symbol gene type direction distance location
LOC103035679 NA coding upstream 318981 21926349 ~ 21934395 (+)
LOC103037976 LOC103037976,LOC108437127 coding upstream 636940 21611572 ~ 21616436 (+)
nrp2 nrp2,nrp2a,LOC107556288,LOC107750056,LOC107749808 coding upstream 691722 21417436 ~ 21561654 (+)
mdh1b NA coding upstream 1296343 20944945 ~ 20957033 (+)
LOC103031253 hecw2,LOC107676038,LOC108258347,LOC107674007,LOC107706834 coding upstream 1344601 20860945 ~ 20908775 (+)
LOC103046323 LOC108441470 coding downstream 59613 22313226 ~ 22480428 (+)
LOC111193458 NA coding downstream 255833 22509446 ~ 22517576 (+)
alkbh5 alkbh5 coding downstream 339025 22592638 ~ 22599854 (+)
LOC103042026 mief2,LOC107725398,LOC107564637,LOC108258856,LOC107692671 coding downstream 347597 22601210 ~ 22616958 (+)
LOC103042343 NA coding downstream 365417 22619030 ~ 22631714 (+)
G105542 NA non-coding upstream 22056 22231007 ~ 22231320 (+)
G105501 NA non-coding upstream 260813 21990430 ~ 21992563 (+)
G105491 NA non-coding upstream 287839 21964744 ~ 21965537 (+)
LOC103035373 NA non-coding upstream 292882 21952792 ~ 21960494 (+)
G105484 NA non-coding upstream 333166 21917988 ~ 21920210 (+)
G105580 NA non-coding downstream 155813 22409426 ~ 22466799 (+)
G105581 LOC103043780 non-coding downstream 234625 22488238 ~ 22490742 (+)
G105645 NA non-coding downstream 438038 22691651 ~ 22692463 (+)
G105654 NA non-coding downstream 452887 22706500 ~ 22706805 (+)
G105668 NA non-coding downstream 525657 22779270 ~ 22791181 (+)
G105357 NA other upstream 884172 21327192 ~ 21369204 (+)
G105276 NA other upstream 1197893 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other upstream 1224386 21019038 ~ 21028990 (+)
nfkbiz nfkbiz other upstream 2508452 19734226 ~ 19744924 (+)
G104656 pcdh8 other upstream 3330173 18919060 ~ 18923203 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 1472 22255085 ~ 22283453 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other downstream 271644 22525257 ~ 22588961 (+)
LOC103038624 zgc:77849,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708,LOC107564565 other downstream 556466 22810079 ~ 22820096 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other downstream 1662022 23915635 ~ 23923771 (+)
G106036 NA other downstream 1733594 23987207 ~ 23989592 (+)

Expression


Co-expression Network