G105580


Basic Information

Item Value
gene id G105580
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 22409426 ~ 22466799 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU142689
cccgttggacagataaaaaacagtgatcacactcccgccgacactcaaaacttgagagccctgtctatatttctataaatccgttttcagtttctcctccgtggttgaaaggcagctgtctctcacacagcagaactgagggcggggctgcgctcatgcagaggctctctatttaaatgaataggatgcgctgtgttggtgccgcgccatttgcgtagcgcgctgcgctatttgcgtagcgcgcgcgggagggatcgtcgatcctctttttgacttcgatactcgagatcgtgacctcatttcgattcgatttcgataaaatatcgagatcgtgacacccctactgctcacgcaaccctaaagtgtaaatgagtgtgtaCTTATTTTCTTAAACAGTATTGTTCAATTTTCTCTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142689 True 416 lncRNA 0.48 2 22409426 22466799

Neighbor

gene id symbol gene type direction distance location
LOC103035679 NA coding upstream 475031 21926349 ~ 21934395 (+)
LOC103037976 LOC103037976,LOC108437127 coding upstream 792990 21611572 ~ 21616436 (+)
nrp2 nrp2,nrp2a,LOC107556288,LOC107750056,LOC107749808 coding upstream 847772 21417436 ~ 21561654 (+)
mdh1b NA coding upstream 1452393 20944945 ~ 20957033 (+)
LOC103031253 hecw2,LOC107676038,LOC108258347,LOC107674007,LOC107706834 coding upstream 1500651 20860945 ~ 20908775 (+)
LOC111193458 NA coding downstream 42647 22509446 ~ 22517576 (+)
alkbh5 alkbh5 coding downstream 125839 22592638 ~ 22599854 (+)
LOC103042026 mief2,LOC107725398,LOC107564637,LOC108258856,LOC107692671 coding downstream 134411 22601210 ~ 22616958 (+)
LOC103042343 NA coding downstream 152231 22619030 ~ 22631714 (+)
LOC103041008 slc29a4,LOC108439098 coding downstream 204914 22671713 ~ 22689088 (+)
G105547 NA non-coding upstream 155813 22253376 ~ 22253613 (+)
G105542 NA non-coding upstream 178106 22231007 ~ 22231320 (+)
G105501 NA non-coding upstream 416863 21990430 ~ 21992563 (+)
G105491 NA non-coding upstream 443889 21964744 ~ 21965537 (+)
LOC103035373 NA non-coding upstream 448932 21952792 ~ 21960494 (+)
G105581 LOC103043780 non-coding downstream 21439 22488238 ~ 22490742 (+)
G105645 NA non-coding downstream 224852 22691651 ~ 22692463 (+)
G105654 NA non-coding downstream 239701 22706500 ~ 22706805 (+)
G105668 NA non-coding downstream 312471 22779270 ~ 22791181 (+)
G105760 LOC108439083,LOC107725390,LOC107692695,LOC107722958,LOC107564541,LOC107590710 non-coding downstream 458318 22925117 ~ 22928356 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other upstream 125973 22255085 ~ 22283453 (+)
G105357 NA other upstream 1040222 21327192 ~ 21369204 (+)
G105276 NA other upstream 1353943 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other upstream 1380436 21019038 ~ 21028990 (+)
nfkbiz nfkbiz other upstream 2664502 19734226 ~ 19744924 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other downstream 58458 22525257 ~ 22588961 (+)
LOC103038624 zgc:77849,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708,LOC107564565 other downstream 343280 22810079 ~ 22820096 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other downstream 1448836 23915635 ~ 23923771 (+)
G106036 NA other downstream 1520408 23987207 ~ 23989592 (+)
G106146 NA other downstream 1944409 24411208 ~ 24413098 (+)

Expression


Co-expression Network