G105645


Basic Information

Item Value
gene id G105645
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 22691651 ~ 22692463 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU142768
TTCTGACTCTCAGTCTGTTTTGAAAAGCCTAACGAACAGTCAAAAGTCATCAAGGATAGACATTATTTATGACGTCCTCATGATCCTTCTCAGATTACAGCATTTGGGTTTATCAGTTGGCTTTCTGTGGGGTACCAGCTCATGTGGGGGTGGAGGGCAATGAATGTGCTGATATGTTGGCAAAGCGAGCCCTTACGctggactttattaatgtttcagTGCCCTTAAGCAGGCAGGAGGCTAAGCTGctcattaaaaaatatgtaactaGGACTTGGCAAGGTATGTGGGATGGGGGAACAAAAAGGAAGGCATCTTTATAAGTTTCAAAGGTTAGTAGGACAGAGAATAATTAGAGGTAAAAATAGACAGGAAGAGTTGGCTCTTACCAGGGTACGTATAGGACATTGTGGACTGAATCAGAGTCTGTTCAGAATTGGTAAACATCCGGATGGCAATTGTCTGTATTGCTCTCAACCAGAGACTATAGAACATGTCTTAATACAGTGTGTGGCCTATGATATACAAAGGGAAGAGGTGTTTGGAGGAGTTCGGGCAGTAGGGAATCTATCTATACATAGTATGATTCAGGACACATATAAGTTGATTAAATTTCTTAAATTATCTGGGCTGATTAATAGGATTTAGAATTCAGCATTTCATGTTCTATCCAGTAAGTGGCAGTAATGCACCAATGACAGGAGTGCTGGCTGCCATTAATTcgacagaagaagaagaagaagaagaggagccTTGGAATGGTTGGATGCAAAAACTACGGTTTTCAGATGCGATGCAGCTCAGCAGCACGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142768 True 813 lncRNA 0.42 1 22691651 22692463

Neighbor

gene id symbol gene type direction distance location
LOC103041008 slc29a4,LOC108439098 coding upstream 2563 22671713 ~ 22689088 (+)
LOC103042343 NA coding upstream 59937 22619030 ~ 22631714 (+)
LOC103042026 mief2,LOC107725398,LOC107564637,LOC108258856,LOC107692671 coding upstream 74693 22601210 ~ 22616958 (+)
alkbh5 alkbh5 coding upstream 91797 22592638 ~ 22599854 (+)
LOC111193458 NA coding upstream 174075 22509446 ~ 22517576 (+)
LOC103039247 LOC108439081 coding downstream 69975 22762438 ~ 22774207 (+)
LOC103045101 NA coding downstream 590268 23282731 ~ 23286928 (+)
LOC103044794 NA coding downstream 599730 23292193 ~ 23305156 (+)
prkcb prkcb,LOC101478005,LOC108258960 coding downstream 621169 23313632 ~ 23390445 (+)
cacng3 cacng3,LOC108439097,LOC108258515 coding downstream 707808 23400271 ~ 23410018 (+)
G105581 LOC103043780 non-coding upstream 200909 22488238 ~ 22490742 (+)
G105580 NA non-coding upstream 224852 22409426 ~ 22466799 (+)
G105547 NA non-coding upstream 438038 22253376 ~ 22253613 (+)
G105542 NA non-coding upstream 460331 22231007 ~ 22231320 (+)
G105501 NA non-coding upstream 699088 21990430 ~ 21992563 (+)
G105654 NA non-coding downstream 14037 22706500 ~ 22706805 (+)
G105668 NA non-coding downstream 86807 22779270 ~ 22791181 (+)
G105760 LOC108439083,LOC107725390,LOC107692695,LOC107722958,LOC107564541,LOC107590710 non-coding downstream 232654 22925117 ~ 22928356 (+)
G105793 NA non-coding downstream 435492 23127955 ~ 23128154 (+)
G105796 NA non-coding downstream 448931 23141394 ~ 23141901 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other upstream 102690 22525257 ~ 22588961 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other upstream 408198 22255085 ~ 22283453 (+)
G105357 NA other upstream 1322447 21327192 ~ 21369204 (+)
G105276 NA other upstream 1636168 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other upstream 1662661 21019038 ~ 21028990 (+)
LOC103038624 zgc:77849,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708,LOC107564565 other downstream 117616 22810079 ~ 22820096 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other downstream 1223172 23915635 ~ 23923771 (+)
G106036 NA other downstream 1294744 23987207 ~ 23989592 (+)
G106146 NA other downstream 1718745 24411208 ~ 24413098 (+)
LOC111193563 NA other downstream 2669281 25361744 ~ 25369439 (+)

Expression


Co-expression Network