G105804


Basic Information

Item Value
gene id G105804
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 23179282 ~ 23251816 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU142943
CCTGGGTTTTTTGAATGAAGCAAGCTTTACTGCAAGTAATTTAGGCACACAACTTAGTTAACAGTATAATTAGgacaaagtataaaaataaagttcatCCTACTGAACCACTGTAATCTGAAATAACTGATGAATCCTGCTCGGTGAAATCTCTATCTATGTGGTTTAGAGAAATGTTATGCTCCTCATTGTTTGCAGTCATGAATACGGTGACCATATTTCCATACTTCCAAGAGAGGACACACAATTAgcatacatttttaaaccttaatttactttaatttaaagctaCATTTCAGGTTATTTAATAGGCTGGTGTCAATAAATACAGGAAACATTAAGGGGGTTCTAAAAGATTTGATGAATGGGTAGTATACATTAATATACTAACTAGTAATACATTTAACCAAAGAGTGTATGTTGTCAAATCGTCTCCATTCATTTCAATGCAATTGTctcatacagaaataaataaaaataaataaataaataaaaaacatgatttctTACAAATCAACAGCAAACAGTACACAAACAGAATAGTCTCAGCTGCTATTAAACTATGCGCTATTTCAGTAGACACTTTTCAGTCTTGCTGGTGTGTCTGACAGGTTATaactgtgtgtaatttatttgatttatatttgaGACTGAGGCTTTTTCTTTACCACCTTTCAGAATTTAGgtcatatattacatacaggggttggacaataaaactgaaacacctgtcattttagtgtgggaggtttcatggctaaattggagcagcctggtggccaatcttcattaattgctcgttgcaccagtaagagcagagtgtgaaggttcagttagcagggtaagagcacagttctgctcaaaatattgcaatgcacacaacattatgggtgacataccagagttcaaaagaggacaaattgttggtgcacgtcttgctggagcatctgtgaccaagacagcaagtctttgtgatgtatcaagagccacggtatccagggtactgtcagcataccaccaagaaggaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcgggtgctaacccagattgtatccaaaaaac

Function

NR:

description
PREDICTED: dual specificity tyrosine-phosphorylation-regulated kinase 1A-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142943 True 1121 lncRNA 0.37 2 23179282 23251816

Neighbor

gene id symbol gene type direction distance location
LOC103039247 LOC108439081 coding upstream 405075 22762438 ~ 22774207 (+)
LOC103041008 slc29a4,LOC108439098 coding upstream 490194 22671713 ~ 22689088 (+)
LOC103042343 NA coding upstream 547568 22619030 ~ 22631714 (+)
LOC103042026 mief2,LOC107725398,LOC107564637,LOC108258856,LOC107692671 coding upstream 562324 22601210 ~ 22616958 (+)
alkbh5 alkbh5 coding upstream 579428 22592638 ~ 22599854 (+)
LOC103045101 NA coding downstream 30915 23282731 ~ 23286928 (+)
LOC103044794 NA coding downstream 40377 23292193 ~ 23305156 (+)
prkcb prkcb,LOC101478005,LOC108258960 coding downstream 61816 23313632 ~ 23390445 (+)
cacng3 cacng3,LOC108439097,LOC108258515 coding downstream 148455 23400271 ~ 23410018 (+)
LOC103041889 NA coding downstream 183051 23434867 ~ 23439103 (+)
G105802 NA non-coding upstream 24494 23154435 ~ 23154788 (+)
G105801 NA non-coding upstream 26470 23152578 ~ 23152812 (+)
G105796 NA non-coding upstream 37381 23141394 ~ 23141901 (+)
G105793 NA non-coding upstream 51128 23127955 ~ 23128154 (+)
G105760 LOC108439083,LOC107725390,LOC107692695,LOC107722958,LOC107564541,LOC107590710 non-coding upstream 250926 22925117 ~ 22928356 (+)
G105872 NA non-coding downstream 138917 23390733 ~ 23397862 (+)
G105879 NA non-coding downstream 159467 23411283 ~ 23412044 (+)
G105891 ndufab1,LOC107590767 non-coding downstream 194058 23445874 ~ 23453226 (+)
G105906 NA non-coding downstream 242259 23494075 ~ 23496556 (+)
G105940 ubn1 non-coding downstream 328339 23580155 ~ 23586217 (+)
LOC103038624 zgc:77849,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708,LOC107564565 other upstream 359186 22810079 ~ 22820096 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other upstream 590321 22525257 ~ 22588961 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other upstream 895829 22255085 ~ 22283453 (+)
G105357 NA other upstream 1810078 21327192 ~ 21369204 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other upstream 2150292 21019038 ~ 21028990 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other downstream 663819 23915635 ~ 23923771 (+)
G106036 NA other downstream 735391 23987207 ~ 23989592 (+)
G106146 NA other downstream 1159392 24411208 ~ 24413098 (+)
LOC111193563 NA other downstream 2109928 25361744 ~ 25369439 (+)
LOC111193565 NA other downstream 2206999 25458815 ~ 25570821 (+)

Expression


Co-expression Network