G105879


Basic Information

Item Value
gene id G105879
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 23411283 ~ 23412044 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU143036
TTGATTTCTTGGTTTCTCAATTCTTTATTTTTGAACTTTGTGTAATGTCTATTTAAAGGGCTACTTCACAAGGGATATAAGGCATTTATTTCTCAACAGCAATAATCTGTGTGTAGCCTACAATGATCTTctgtaacattaaaaccactgatgtAAACACTTGATTTCCTCATTGGCAGCCATCAAGTGGtgctatatacatatattaagcAGGAAGTGAACAGCCAGTCTTTGAAGTCATTGAAGCTGATGTgttaaaagcagaaaaatgggcAAGCATTAAAATCTGAGGCACTGTAACAAGAGCCAAACTATGAAGCAAGGTgtctgggtcagaacatctccaaaacatcagacAGGACAAGCAGTGAACCAACAACAGGGTCATTATGGGCACCAAAGGCATACTGGTGTAATCTATGGAAGCTTTACCCTCACAACTTACAGAGCTTACACCTTCAgatcctgcatccattacaaaaCCAGCAAGatttttgttgcacataacactaatttAGACCTCATTGAgttccatcagaatagaccatgaaccagccaatgaaaacattTACACGCTAATGAAAACGTGGCTTAGCCCTGGGCACTAGAGCCAACAGGGCAAAGTAAGagctcatttttacatttttcaatatctaatacaaaataaaaaaaaaattagttaaaTGGATAAAatctttatatacattttatataggtt

Function

GO:

id name namespace
GO:0005746 mitochondrial respirasome cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143036 True 718 lncRNA 0.36 2 23411283 23412044

Neighbor

gene id symbol gene type direction distance location
cacng3 cacng3,LOC108439097,LOC108258515 coding upstream 1265 23400271 ~ 23410018 (+)
prkcb prkcb,LOC101478005,LOC108258960 coding upstream 20838 23313632 ~ 23390445 (+)
LOC103044794 NA coding upstream 106127 23292193 ~ 23305156 (+)
LOC103045101 NA coding upstream 124355 23282731 ~ 23286928 (+)
LOC103039247 LOC108439081 coding upstream 637076 22762438 ~ 22774207 (+)
LOC103041889 NA coding downstream 22823 23434867 ~ 23439103 (+)
LOC107197111 NA coding downstream 42412 23454456 ~ 23459515 (+)
plk1 plk1,LOC107722962 coding downstream 68412 23480456 ~ 23490205 (+)
chtf18 chtf18,LOC107725360 coding downstream 112672 23524716 ~ 23552698 (+)
LOC103035907 NA coding downstream 220335 23632379 ~ 23638888 (+)
G105872 NA non-coding upstream 13421 23390733 ~ 23397862 (+)
G105804 NA non-coding upstream 159467 23179282 ~ 23251816 (+)
G105803 NA non-coding upstream 176231 23178637 ~ 23235052 (+)
G105802 NA non-coding upstream 256495 23154435 ~ 23154788 (+)
G105801 NA non-coding upstream 258471 23152578 ~ 23152812 (+)
G105891 ndufab1,LOC107590767 non-coding downstream 33830 23445874 ~ 23453226 (+)
G105906 NA non-coding downstream 82031 23494075 ~ 23496556 (+)
G105940 ubn1 non-coding downstream 168111 23580155 ~ 23586217 (+)
G105974 NA non-coding downstream 236386 23648430 ~ 23648659 (+)
G105984 NA non-coding downstream 277102 23689146 ~ 23689374 (+)
LOC103038624 zgc:77849,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708,LOC107564565 other upstream 591187 22810079 ~ 22820096 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other upstream 822322 22525257 ~ 22588961 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other upstream 1127830 22255085 ~ 22283453 (+)
G105357 NA other upstream 2042079 21327192 ~ 21369204 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other upstream 2382293 21019038 ~ 21028990 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other downstream 503591 23915635 ~ 23923771 (+)
G106036 NA other downstream 575163 23987207 ~ 23989592 (+)
G106146 NA other downstream 999164 24411208 ~ 24413098 (+)
LOC111193563 NA other downstream 1949700 25361744 ~ 25369439 (+)
LOC111193565 NA other downstream 2046771 25458815 ~ 25570821 (+)

Expression


Co-expression Network