G106172


Basic Information

Item Value
gene id G106172
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 24537561 ~ 24537817 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU143407
cgtcgccaagatagcgatgaacgtctgaacgactgttggcgtctgtctaggttgtattcagtcagtggagctcctgtgttttctgttaccaagataaacaagcaaaactccagaaatgtacctgaacacacctcatttcataaccagaacaccacgcccatcagtgtagatatattcagaagctctgctgctatttaaaccaggcaggaggaaggagtgaaaatagacttttgatggggtgtaagatagtgatGAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143407 True 257 lncRNA 0.44 1 24537561 24537817

Neighbor

gene id symbol gene type direction distance location
gpc6 LOC108414264,LOC105911916,LOC107730398,LOC101477426,LOC100710496,LOC107744956 coding upstream 422100 23970691 ~ 24115461 (+)
LOC103035907 NA coding upstream 898673 23632379 ~ 23638888 (+)
chtf18 chtf18,LOC107725360 coding upstream 984863 23524716 ~ 23552698 (+)
plk1 plk1,LOC107722962 coding upstream 1047356 23480456 ~ 23490205 (+)
LOC107197111 NA coding upstream 1078046 23454456 ~ 23459515 (+)
slitrk6 slitrk6,LOC107674010,LOC107730399,LOC107558904,LOC107737039,LOC107574216,LOC107698122 coding downstream 539119 25076936 ~ 25102573 (+)
LOC103022503 NA coding downstream 834989 25372806 ~ 25374832 (+)
LOC103023109 NA coding downstream 845055 25382872 ~ 25386300 (+)
LOC111193564 NA coding downstream 881723 25419540 ~ 25422258 (+)
LOC103025458 NA coding downstream 885895 25423712 ~ 25449279 (+)
G106157 NA non-coding upstream 28168 24508542 ~ 24509393 (+)
G106155 NA non-coding upstream 29132 24508012 ~ 24508429 (+)
G106101 NA non-coding upstream 416357 24120972 ~ 24121204 (+)
G106026 NA non-coding upstream 417066 24119780 ~ 24120495 (+)
G106054 NA non-coding upstream 496844 24040262 ~ 24040717 (+)
G106195 NA non-coding downstream 178720 24716537 ~ 24716804 (+)
G106205 NA non-coding downstream 260051 24797868 ~ 24798201 (+)
G106217 NA non-coding downstream 369331 24907148 ~ 24907931 (+)
G106220 NA non-coding downstream 370927 24908744 ~ 24909029 (+)
G106248 NA non-coding downstream 673762 25211579 ~ 25212076 (+)
G106146 NA other upstream 124463 24411208 ~ 24413098 (+)
G106036 NA other upstream 547969 23987207 ~ 23989592 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other upstream 613790 23915635 ~ 23923771 (+)
LOC103038624 zgc:77849,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708,LOC107564565 other upstream 1717465 22810079 ~ 22820096 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other upstream 1948600 22525257 ~ 22588961 (+)
LOC111193563 NA other downstream 823927 25361744 ~ 25369439 (+)
LOC111193565 NA other downstream 920998 25458815 ~ 25570821 (+)
LOC103037236 NA other downstream 1616600 26154417 ~ 26171801 (+)
G106661 lancl1 other downstream 3476699 28014516 ~ 28022047 (+)
G106673 NA other downstream 3528535 28066352 ~ 28066983 (+)

Expression


Co-expression Network