G106273


Basic Information

Item Value
gene id G106273
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 25456120 ~ 25548983 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU143542
CGTTACGTCACTGAATCCACTGTGAAGATTCAGATCCCCGCTTTATTCCACTGACTGAAACTGGAGAACATGTTCTGATGTTTTAATCCgtcatatttttcatattttatacctTATTTACTCACAGTTTTCACACCAAtcctttaaataaaatctaaatctatAACTGATCTATTTTATATCTGAACCCATCGATGCCCATCAGTCCATCTGATCACATATTCTGAGATGATCaataaaaagaagataaatCCTAATcccaacacagcacaacacattCAGTTTTAGAATAAAACCctgTAATTAAATTGTGCAGATTGTAATTGTGAATATAAGGGAatgtaatttgtattatttattatctttgtttGTGGTTAATATAAAATGGAGAATTGTGTCAgtgaaatgtttatttaatggttTAAAGATGAAACTGGTTTATTTTAGTTGTTATAAAGGTTTATTAGTGTGAATGAGCTTCAGTGAAACAGAATGAAACTTGTAGGAAATGAAACTGGACAGTAGAAGCAGCGTAGAGACGAGTATCAGAAGcttcactgaatcattttctgaTTAAACTGCTTCAGCTGTGTTAATGATCCAGAAGCTTGGTAATGGTCATCACTAGTGTAAAGCTGTAGCAGTGAGGATGTAGAAAAGGACATTTCATAGCTCTATAATGAGGGAAAGCAGCACAGAGCTCAGTGTATCTCCAGCCTGCAGTAAAAGCTTTATTCTGAAGTGTTTAGCAGCAGCCAGAGGCTGGAGTTTCCTGCTGATTCAGAATAAGAGCGTCCTCTGCAGGGGGAGAGGAGTATCACCTATTAGCCTCAGCTGAATAAAACTCAACTATTAACCAAActaataaaactataataataactaaactAACATTTATAACCAGAtcaatctaatctaatctaactCAATAAAGAAATTCAATATTAAAAGtccctgtttatttttactgaacatAATTTAACCCTTCTTTAGTCATTATAGTTACATTTATCACAGGTAATAATAACCAGTGTTACTGTGGTCAGTAATATTACTATAGTACAGTCCTCTGATTTAAATCACTGTTATACAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143542 True 1094 lncRNA 0.34 2 25456120 25548983

Neighbor

gene id symbol gene type direction distance location
LOC103025458 NA coding upstream 6841 25423712 ~ 25449279 (+)
LOC111193564 NA coding upstream 33862 25419540 ~ 25422258 (+)
LOC103023109 NA coding upstream 69820 25382872 ~ 25386300 (+)
LOC103022503 NA coding upstream 81288 25372806 ~ 25374832 (+)
slitrk6 slitrk6,LOC107674010,LOC107730399,LOC107558904,LOC107737039,LOC107574216,LOC107698122 coding upstream 353547 25076936 ~ 25102573 (+)
ube2f ube2f,LOC107725407,LOC107674019,LOC107556276,LOC107707607,LOC107566887 coding downstream 191244 25740227 ~ 25759643 (+)
LOC103038099 erbb4,LOC108441681,LOC108440448,LOC101079286 coding downstream 214864 25763847 ~ 26023673 (+)
LOC111193484 NA coding downstream 526715 26075698 ~ 26078799 (+)
LOC103039357 NA coding downstream 639982 26188965 ~ 26193144 (+)
LOC103039973 NA coding downstream 696256 26245239 ~ 26248347 (+)
G106255 NA non-coding upstream 53208 25360085 ~ 25402912 (+)
LOC103043670 NA non-coding upstream 54315 25400917 ~ 25401805 (+)
G106250 NA non-coding upstream 242651 25213203 ~ 25213469 (+)
G106248 NA non-coding upstream 244044 25211579 ~ 25212076 (+)
G106220 NA non-coding upstream 547091 24908744 ~ 24909029 (+)
G106286 NA non-coding downstream 3608 25552591 ~ 25554715 (+)
G106275 NA non-coding downstream 9598 25558581 ~ 25560028 (+)
G106289 NA non-coding downstream 14611 25563594 ~ 25566426 (+)
G106370 NA non-coding downstream 161233 25710216 ~ 25710456 (+)
G106391 NA non-coding downstream 405954 25954937 ~ 25960449 (+)
LOC111193563 NA other upstream 86681 25361744 ~ 25369439 (+)
G106146 NA other upstream 1043022 24411208 ~ 24413098 (+)
G106036 NA other upstream 1466528 23987207 ~ 23989592 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other upstream 1532349 23915635 ~ 23923771 (+)
LOC103038624 zgc:77849,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708,LOC107564565 other upstream 2636024 22810079 ~ 22820096 (+)
LOC103037236 NA other downstream 605434 26154417 ~ 26171801 (+)
G106661 lancl1 other downstream 2465533 28014516 ~ 28022047 (+)
G106673 NA other downstream 2517369 28066352 ~ 28066983 (+)
LOC103027743 NA other downstream 3154084 28703067 ~ 28724026 (+)
LOC111193573 NA other downstream 3600082 29149065 ~ 29159680 (+)

Expression


Co-expression Network