G106275


Basic Information

Item Value
gene id G106275
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 25558581 ~ 25560028 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU143545
CTTAAATAAAATCGCTTCACTCAACAGTTCTTGCATAGATATATTACAAtaccaatttaaaaaagaattatGAAACAAAccagtaacaaaaataaactcttctttttcttttttccttaataaagaACATTGTCATACTAATATCATATAATACAAATCATATTTGGAAATGCTTTTTACAGCAAAGAAAACACAACTTAAAGGAATGGAGCGAGAGATCGGAGTGGAATAACTGGGAAAGAGAGCAGGAGGAGAGTGATGGATTTACAGGAGGAAACTTGGGAGAAGTCCGTAAATAGGAAAATCGACACAGAGACACTCTTTCAGAGTCAAACATTGACGGACTGATGGATGAAAAACTTCCCAAGCTGTTTGTGTTGAGGTTCAGCCTGAGTTCGGGTTTTCTCTGGAGTTCTGAATCAGTGTTGTGAATTAGGTTCATTCAGAGTTCTGAAAAAAAGATGTTGGTGGAGTGGGTTCATCTGTACACAGGAAATCCAAAACAAAGTTTAGACCCAGTTTTGTTCTTGAGGAGTTTATGAGGGAATGTAACATGTAACACAATACAAAACTGACGTAACGAACATTAAACACAAGACACTCGAGAACATGAAGACACTGCTGTTTTAAAGTTGGTTCTACAGGACTGGAGGAAAGTTGGAAAGTTCTAGGCATTAATAGAGTAAAGGTGTAGTAGAAGCTCCAAAGTACTGGGTaattatgataaaatataagatatgttccaatacacacagcaaatttctggagttctaaaatctggagttaaacaaaaatgtgtgaaagtgttaaattgtgtgagtttattctccaacttaaaccacaagttgagttgaggggaactctttggtggtgtagagtttatttcagagttcattccaaggtgttgaggactgaactctctaatgggcaTGTCCCCCAATCCTAGCTCTTCATCAGCGTGTAGTCTTCCTTCCATGGggtgttacattacattttatataatgtacACAACACCTGAAGAAATGACAACTTGCTGACCTTACAGCcttcaaccaaccaattaaTGTCCAGTATAGGAAGACTCTGCCCACATAAATGAAGATATCAGAATGTAGATTTTTAGATCGTGATATTTTACCAAAATTATTACTAGTACTTTGAAGTCTGTGCCACAGTTTTACTACAGTACTAAGACCCTAAGGGGCATTAAGTGAAAGTGTTGCTCTGCAGAACTGCTGAAGAACATGAGGAGAGCTGATTTATATTTACAGCAGCGATGAATGAAGATCTGAAATCTTCAGATGTAAGACTGTAAGTTAGTGAGTCTGGGAGGGGTTGCTGGGATTGGGGTGATTCTTCTCCAAGCTAATGTGGCCAAGAGagatttttgtttgtgtgtgtgaatgtgaagggggggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143545 True 1418 lncRNA 0.38 2 25558581 25560028

Neighbor

gene id symbol gene type direction distance location
LOC111193460 NA coding upstream 39215 25484843 ~ 25519366 (+)
LOC103025458 NA coding upstream 109302 25423712 ~ 25449279 (+)
LOC111193564 NA coding upstream 136323 25419540 ~ 25422258 (+)
LOC103023109 NA coding upstream 172281 25382872 ~ 25386300 (+)
LOC103022503 NA coding upstream 183749 25372806 ~ 25374832 (+)
ube2f ube2f,LOC107725407,LOC107674019,LOC107556276,LOC107707607,LOC107566887 coding downstream 180199 25740227 ~ 25759643 (+)
LOC103038099 erbb4,LOC108441681,LOC108440448,LOC101079286 coding downstream 203819 25763847 ~ 26023673 (+)
LOC111193484 NA coding downstream 515670 26075698 ~ 26078799 (+)
LOC103039357 NA coding downstream 628937 26188965 ~ 26193144 (+)
LOC103039973 NA coding downstream 685211 26245239 ~ 26248347 (+)
G106286 NA non-coding upstream 3866 25552591 ~ 25554715 (+)
G106273 NA non-coding upstream 9598 25456120 ~ 25548983 (+)
G106284 NA non-coding upstream 11771 25542607 ~ 25546810 (+)
G106274 NA non-coding upstream 16313 25452137 ~ 25542268 (+)
G106277 NA non-coding upstream 27957 25504806 ~ 25530624 (+)
G106289 NA non-coding downstream 3566 25563594 ~ 25566426 (+)
G106370 NA non-coding downstream 150188 25710216 ~ 25710456 (+)
G106391 NA non-coding downstream 394909 25954937 ~ 25960449 (+)
G106380 NA non-coding downstream 466216 26026244 ~ 26030682 (+)
G106446 NA non-coding downstream 663108 26223136 ~ 26228689 (+)
LOC111193563 NA other upstream 189142 25361744 ~ 25369439 (+)
G106146 NA other upstream 1145483 24411208 ~ 24413098 (+)
G106036 NA other upstream 1568989 23987207 ~ 23989592 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other upstream 1634810 23915635 ~ 23923771 (+)
LOC103038624 zgc:77849,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708,LOC107564565 other upstream 2738485 22810079 ~ 22820096 (+)
LOC103037236 NA other downstream 594389 26154417 ~ 26171801 (+)
G106661 lancl1 other downstream 2454488 28014516 ~ 28022047 (+)
G106673 NA other downstream 2506324 28066352 ~ 28066983 (+)
LOC103027743 NA other downstream 3143039 28703067 ~ 28724026 (+)
LOC111193573 NA other downstream 3589037 29149065 ~ 29159680 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000073 NA non-coding NC_007112.7 CM002885.2 6398210 ~ 6403223 (+)
grasscarp (Ctenopharyngodon idella) G406927 NA non-coding CI01000299 null 3334043 ~ 3335207 (-)