G106380


Basic Information

Item Value
gene id G106380
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 26026244 ~ 26030682 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU143687
gagtATGATAGAGTGTGGCAGAGTATGGtgcagtgaggtagagtatgatagagtgaggtagagtatgatagagtgaggtagagtgaggtagagtatgataaagtgaggtagagtatgatagagtgaggtagatgccCACAGTGAACACTCACACAAAATTATTTCTTATCCTGGAAATATAAAGACCCACATAGGTGCAGCAAGTGTGGAACCAATCAGTGGATCCCTATTTTTCAAAGTCCTTTCACTGATTGGCTGAGCCTGGTTTGTATGTGTTCCATACCTATGAGCATTCCAAATCTGCAAATCTCTTTCCTAACATTTCTGCACAGGAAAGCCACTAGGACCTTCAGCTCCTCAGAACCTCAAAACCATCCCACCCTGCAGTGGTGAAGAGTGGAATACCTGTTTAACTAAGTGCCTCAACACTTCATTCCAAGGATACCGTTCTCCTCCTGCCTTTTCCTGGATGTTCTGTACATTCTGGACATCTGACTCCCGTTTTCATCACTCTGATCCATCTGGATTAAGATTTCCCTCATTTTAtccaaaagtttttttatgaTACAAACCATACAGCAGATGTGAACATGGTAAATGGATTATAACCCAACGTGATCCTGAAGCCACAGCAGGTACAAcacttcttacatttttcaaaGACTTCAAAGATCTTGCTTGCTCACATTTTCCAAACAGGACGTTGGTATAATATGGATTTTATACTCATTTTTCACTTTCTCGTTCTCACAACACCTCCTGCATTGTAGATGCTGTgatgtacatacagtataaggACTTCTGTGATGTTAAATCCACTcagttttgaatatttttatatatacccACACCTGGCACCTGGTTCGATTCATCCACTCTTTACTGTCGGACTTTGCACAGATCATTTCACAGATCTGGGGTTTCATACTGGGCTgtacaacaaatcatattttattgttatctCGATATTCTCGAGTTTTCATCATTAACACATCAAAAAAGCTGATAACACCGTGTATAACAGTGAACTCAAACTGCATTACCCTCATGCatcaacagagggagctctttacACTGCAGATAATGATCACGTGATGtaacgaggctggaggcagagtgaggtagactgagGCAGATCGAGATAGAATGAGCCACTAGtgagagtgagatatagtgatGTAGAGTTAGATAAAGTGTCTTGGAGTGAGGAAGAGTTAACTAGAGGGAGGTGGAGTACGGTAGAGTGAGTTAGCACAAGAGGAAGCGTGAGGTAAATGGAGCCACtctgaggtagagagaggatagagtgaggtagagcaaggcagaatgaggtagagtgagagtagaTAGAGGTAACGTGtgataaagtgaggcagagtgattTAGAATGAGGCAGATGGAAGTAGAGAGAGGGTAtcgtgaggcagaatgaggtagagtgagagtagaTAGAGGTtatgtgaggtagagtgaggcagagtgaagtagaCAGAGGGTATAGtggggcagagtgaggtagagcaaggcagaatgaggtagaggtagagtagATAGAGGAaatgtgaggtagagtaaattacagtgagataaagtgaggtagagcgagacaGATTGAAGTAGAGTGAAAGTAAATagtgtggtaatgtgtggtaGAATGAGATACAATAAGGCAGAGTGTGATAAAGCGACGCAGAGAGAGGCAGGGTGAGGTAGAGGCAGATTTAGGTAAAGTGAGAGAAGATAGAGGTAACatgaggtagaggtagagtgaggtaaagtgaagcaGAATGAGGTCGATGGAGCCACtctgaggtagagagaggatAGAGTGAGGTCGGGCGAGGGTATAGTGAGCCAGAGTGATTTAACATGCAGgcagaggcagagtgaggtagagctagGTAGAGAGAGGGtatagtgaggcagagtgaagtagagtaagagtaGATAGAGGTAACATGAGGTAAAGAGACTTAGAGTGAGGATAGagaaaggcagagtgaggtaaaaatgAGGTAGAGCGATTTAGAATtgggcagagtgaggtagaatgtggGTAtggtgaggcagagtgagGTAATCTGAGGTAGAGCGAGTTACATTGAGAttaagtgaggcagagtgaggcagaggtccacagtgaaccTCACGCCAAACTACTTCACATCCAGGGAGAAATGAGTGCAGCCAAAGCCAAGTGCTGAAAATATACGTTTTTAATTTGTcaggttttatattaatatcagGATATATAACAGCGTTTTCATACATCACATATGTTTATCTGTATCGTGGTTGTAATTAATGATTATGGGTTAAATTCAGTTCACTCTGTTATTGGCAGGTTTGAGAGAGATCAGGTATTGGCCGatgtgttatttatatatataataacaattcAATAATCAGGTGATCTCCAGTGGAGAATCTCAGTATTGTGAGTCGATGCTTTTGTTCCTGTAGATGAATTTACTCTCTGTGAGAGTGTTTCTGTTTACTGTGGAGGGAGAGATGATTTACTCCACTGATTTACAGACTGTGGGGGGATGAAAcggtttaatatatatatatatatatatatttacgtatttatgtttatgttgtttTGATCACAGGGTTTTACGTACTTGCATGAACTGTATTTATcttttctcattaaataaaaatgtgaattgtCTGATTTCATTCTAAGCCAATCAGGAACAGTGTTGGTTCAGGGGTCGACCAATCAGAATGAAGGATGTATCAAGGGTTGTTCTCGTCTAAACGAATAAGACTGTATTTGATAATGTGATGGAAAAGAACTGTTTACAttctttcttcttatttttattgttagcaTTTTATCTTTAAACTGGTTTCGCCATTTGATTTGGCTTTTTGCTGCTCGTCACTGCTGTGTCTTCTGTTTGttgaaaataaagaacaaataaagtTATTGTTTATATAACGGTC

Function

GO: NA

KEGG:

id description
ko05202 Transcriptional misregulation in cancer

RNA

RNA id representative length rna type GC content exon number start site end site
TU143687 True 2955 lncRNA 0.41 4 26026244 26030682

Neighbor

gene id symbol gene type direction distance location
LOC103038099 erbb4,LOC108441681,LOC108440448,LOC101079286 coding upstream 2571 25763847 ~ 26023673 (+)
ube2f ube2f,LOC107725407,LOC107674019,LOC107556276,LOC107707607,LOC107566887 coding upstream 266601 25740227 ~ 25759643 (+)
LOC111193460 NA coding upstream 506878 25484843 ~ 25519366 (+)
LOC103025458 NA coding upstream 576965 25423712 ~ 25449279 (+)
LOC111193564 NA coding upstream 603986 25419540 ~ 25422258 (+)
LOC111193484 NA coding downstream 45016 26075698 ~ 26078799 (+)
LOC103039357 NA coding downstream 158283 26188965 ~ 26193144 (+)
LOC103039973 NA coding downstream 214557 26245239 ~ 26248347 (+)
LOC111193566 NA coding downstream 219491 26250173 ~ 26254877 (+)
slitrk1 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 coding downstream 480439 26511121 ~ 26515238 (+)
G106391 NA non-coding upstream 65795 25954937 ~ 25960449 (+)
G106370 NA non-coding upstream 315788 25710216 ~ 25710456 (+)
G106289 NA non-coding upstream 459818 25563594 ~ 25566426 (+)
G106275 NA non-coding upstream 466216 25558581 ~ 25560028 (+)
G106286 NA non-coding upstream 471529 25552591 ~ 25554715 (+)
G106446 NA non-coding downstream 192454 26223136 ~ 26228689 (+)
G106466 NA non-coding downstream 254210 26284892 ~ 26285416 (+)
G106476 NA non-coding downstream 279047 26309729 ~ 26309982 (+)
G106486 NA non-coding downstream 421526 26452208 ~ 26452448 (+)
G106541 NA non-coding downstream 738932 26769614 ~ 26769877 (+)
LOC111193565 NA other upstream 455423 25458815 ~ 25570821 (+)
LOC111193563 NA other upstream 656805 25361744 ~ 25369439 (+)
G106146 NA other upstream 1613146 24411208 ~ 24413098 (+)
G106036 NA other upstream 2036652 23987207 ~ 23989592 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other upstream 2102473 23915635 ~ 23923771 (+)
LOC103037236 NA other downstream 123735 26154417 ~ 26171801 (+)
G106661 lancl1 other downstream 1983834 28014516 ~ 28022047 (+)
G106673 NA other downstream 2035670 28066352 ~ 28066983 (+)
LOC103027743 NA other downstream 2672385 28703067 ~ 28724026 (+)
LOC111193573 NA other downstream 3118383 29149065 ~ 29159680 (+)

Expression


Co-expression Network