LOC103037236


Basic Information

Item Value
gene id LOC103037236
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 26154417 ~ 26171801 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU143777
GGACGGAGAAATCAGATCTGATCATCTAGATTCCAGAAATGGATCAGAAGTGGATCTTAGTTTTCTGGCTGTTCTCAGCTGTGTGTGGTGTATCTCCATACGTTCCTCATCGGTATCACTTTGTGGATCAGAGTAAAACCTGGACTGAAGCTCAGAGCTACTGCAGACAGAACTACACTGATCTGGCCACCATCAACAACATGGACGAGATGAAGAAGCTGAACGAGACTCTGA
>XM_022674937.1
GAGGAGGAGAAACCAACAGGAGCAGACGAAGAGAGAGGAAAACGAATGACATACTCTCAGaAAATGGATCCGAATTGTATTTCTGTTATGTTCCTCCTCTCAGCTGTGTGTGGTGTATCTCCATACGTTCCTCATCGGTATCACTTTGTGGATCAGAGTAAAACCTGGACTGATGCTCAGAGCTACTGCAGACAGACCTACACTGATTTGGCCACCATCAACAACATGGACGAGATGAAGAAGCTGAACGACACTCTGAAGGATAAAACTGACAACTATGTCTGGATTGGTCTGAACAGAGGGAACAGAGTATGCATTtacttcttttccttttcttctccAGATAAACTGATCCTGATCCAGCAGAATCTGAGCTGGAAAGAAGCTCTGAGATACTGCAGAGAGAAACATGTGGACCTGGTTTCAGTTCACTCTGAGGAGATCCAGCTCTGGGTGAAGGATGTGGCTCAGAAAGCCTCCACTGATCATGTGTGGCTGGGTCTGCGTCACACCTGCACCCTCAGATTCTGGTTCTGGGTGGGTGGAGAATCTTTCTGCTATGATAACTGGGCTCCAGGTAACGGTGCAGAAGGTGAAGACTGCAGTCCTGTAGAGAGAACTGGAGCGGTGCAGGCTAGAGGAGATCAGCAGTGGGTCAGCCTGCCTGAGAACCAGACTCTCAACTTCATCTGCATCAGATATGAAAACTGAAACCAGGTGTGAAGTGTCTTCTGGATCATCATCAGCTTTccaacatttactgtattttagctt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143777 False 234 lncRNA 0.46 3 26166116 26171801
XM_022674937.1 True 774 mRNA 0.47 5 26154417 26170123

Neighbor

gene id symbol gene type direction distance location
LOC111193484 NA coding upstream 75618 26075698 ~ 26078799 (+)
LOC103038099 erbb4,LOC108441681,LOC108440448,LOC101079286 coding upstream 130744 25763847 ~ 26023673 (+)
ube2f ube2f,LOC107725407,LOC107674019,LOC107556276,LOC107707607,LOC107566887 coding upstream 394774 25740227 ~ 25759643 (+)
LOC111193460 NA coding upstream 635051 25484843 ~ 25519366 (+)
LOC103025458 NA coding upstream 705138 25423712 ~ 25449279 (+)
LOC103039357 NA coding downstream 17164 26188965 ~ 26193144 (+)
LOC103039973 NA coding downstream 73438 26245239 ~ 26248347 (+)
LOC111193566 NA coding downstream 78372 26250173 ~ 26254877 (+)
slitrk1 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 coding downstream 339320 26511121 ~ 26515238 (+)
LOC111193487 NA coding downstream 467166 26638967 ~ 26643210 (+)
G106380 NA non-coding upstream 123735 26026244 ~ 26030682 (+)
G106391 NA non-coding upstream 193968 25954937 ~ 25960449 (+)
G106370 NA non-coding upstream 443961 25710216 ~ 25710456 (+)
G106289 NA non-coding upstream 587991 25563594 ~ 25566426 (+)
G106275 NA non-coding upstream 594389 25558581 ~ 25560028 (+)
G106446 NA non-coding downstream 51335 26223136 ~ 26228689 (+)
G106466 NA non-coding downstream 113091 26284892 ~ 26285416 (+)
G106476 NA non-coding downstream 137928 26309729 ~ 26309982 (+)
G106486 NA non-coding downstream 280407 26452208 ~ 26452448 (+)
G106541 NA non-coding downstream 597813 26769614 ~ 26769877 (+)
LOC111193565 NA other upstream 583596 25458815 ~ 25570821 (+)
LOC111193563 NA other upstream 784978 25361744 ~ 25369439 (+)
G106146 NA other upstream 1741319 24411208 ~ 24413098 (+)
G106036 NA other upstream 2164825 23987207 ~ 23989592 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other upstream 2230646 23915635 ~ 23923771 (+)
G106661 lancl1 other downstream 1842715 28014516 ~ 28022047 (+)
G106673 NA other downstream 1894551 28066352 ~ 28066983 (+)
LOC103027743 NA other downstream 2531266 28703067 ~ 28724026 (+)
LOC111193573 NA other downstream 2977264 29149065 ~ 29159680 (+)
G107117 NA other downstream 3608525 29780326 ~ 29780927 (+)

Expression


Co-expression Network