G106661 (lancl1)


Basic Information

Item Value
gene id G106661
gene name lancl1
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 28014516 ~ 28022047 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU144091
TGTTGATACACTCCTCTGCTTCCTGGGGCCTCTGCAGGCGATGGTACACCACAGCAGCCACGGCGAGGGGCCCGACGTCCCCGCACAGGAACGTGACCCGGCTCCCGGTCAGACACTTCAGGCTGCGGCTGACGTGGTCGAACGCCCTCTGCAGGAAGGCCGGGTCTCCGTACACCGTGTGGAGGTGCAGGTACAGCAGAGCGATACCTGTGGAGGGAGAGATCTTCTGATGGATAAAACTCATAAACCTCTTACTTTTAAAGATTTCCAAATCACAAAACGTTGTGGCAGAATagaaaattcaaataaataaaataaacattatgaaCTCAAGATACCACTTTATATCATTGccattccttctcacaacacATGACATTGTGGCACTGATGATGATACCACCTGATTAGAGCTGGGTAtcgttttaaaatatttaatactgaTACGATACATTGCATTTGATACCAATTCccaaattatacagacagagtgagtgagggagagacagcacgagagagggagagacagcttgagtgagtgagacagcgcaagtgaggGACAGACAGTGTGAGTGTGGGACAGACAGCGTGAGTGAGGGAcagacagcgcgag
>TU144092
TGTTGATACACTCCTCTGCTTCCTGGGGCCTCTGCAGGCGATGGTACACCACAGCAGCCACGGCGAGGGGCCCGACGTCCCCGCACAGGAACGTGACCCGGCTCCCGGTCAGACACTTCAGGCTGCGGCTGACGTGGTCGAACGCCCTCTGCAGGAAGGCCGGGTCTCCGTACACCGTGTGGAGGTGCAGGTACAGCAGAGCGATACCTGCCCAGCCTGTGTAGCCTGTGCAGTCTCTCGGGTCGGCACTCTTCAGCCCGTTCTCCATCACCGCCAGCAGCTCGCTGATCTTACTGCTGATACGCCCAGCAAACGCGGCCGTCAATCTGCCATGAGCGTCGAATATTCCCTGCACGCTCTCGGGACCGCTGTAGTCCGGATACGGGTTCTTATACGCTCTCGGCTCCGACATCTTTCACAAATCCCAGCAGCGCTGTTATTATTCAGTCTTCTTCTGCTCCTCTCTAGCCCGCTCTCCTCTCACTGCCGATCACTCACTACTGTCCCCCGCCGGCCGGAACACGCC

Function

symbol description
lancl1 Predicted to enable glutathione binding activity; glutathione transferase activity; and zinc ion binding activity. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in cytoplasm and membrane. Predicted to be active in plasma membrane. Orthologous to human LANCL1 (LanC like 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144091 True 612 lncRNA 0.49 2 28014516 28015174
TU144092 False 526 TUCP 0.61 4 28014516 28022047

Neighbor

gene id symbol gene type direction distance location
LOC111193463 NA coding upstream 14664 27993999 ~ 27999852 (+)
LOC103043862 mx1 coding upstream 108871 27890718 ~ 27905645 (+)
LOC103047315 LOC108440455 coding upstream 206432 27802084 ~ 27808084 (+)
arglu1 NA coding upstream 246249 27759212 ~ 27768267 (+)
LOC111193461 cpo,LOC108258336 coding upstream 256419 27745088 ~ 27758097 (+)
LOC111193464 NA coding downstream 667508 28689555 ~ 28692305 (+)
LOC111193465 NA coding downstream 670797 28692844 ~ 28697096 (+)
LOC111193466 NA coding downstream 679965 28702012 ~ 28702921 (+)
LOC111193571 NA coding downstream 763917 28785964 ~ 28791991 (+)
LOC111193468 NA coding downstream 789777 28811824 ~ 28815508 (+)
G106651 NA non-coding upstream 39324 27937210 ~ 27975192 (+)
G106650 NA non-coding upstream 77611 27926260 ~ 27936905 (+)
G106642 NA non-coding upstream 96320 27915547 ~ 27918196 (+)
G106648 NA non-coding upstream 100255 27912306 ~ 27914261 (+)
G106646 NA non-coding upstream 107305 27906956 ~ 27907211 (+)
G106674 NA non-coding downstream 86066 28108113 ~ 28111177 (+)
G106675 NA non-coding downstream 90430 28112477 ~ 28132272 (+)
G106710 NA non-coding downstream 277541 28299588 ~ 28300251 (+)
G106718 NA non-coding downstream 363431 28385478 ~ 28386442 (+)
G106745 NA non-coding downstream 556164 28578211 ~ 28578489 (+)
LOC103037236 NA other upstream 1842715 26154417 ~ 26171801 (+)
LOC111193565 NA other upstream 2443695 25458815 ~ 25570821 (+)
LOC111193563 NA other upstream 2645077 25361744 ~ 25369439 (+)
G106146 NA other upstream 3601418 24411208 ~ 24413098 (+)
G106036 NA other upstream 4024924 23987207 ~ 23989592 (+)
G106673 NA other downstream 44305 28066352 ~ 28066983 (+)
LOC103027743 NA other downstream 681020 28703067 ~ 28724026 (+)
LOC111193573 NA other downstream 1127018 29149065 ~ 29159680 (+)
G107117 NA other downstream 1758279 29780326 ~ 29780927 (+)

Expression


Co-expression Network