G106760


Basic Information

Item Value
gene id G106760
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 28667114 ~ 28673936 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU144220
aacctacttttgcaaactagtcctaggaattttgaccaatcctggcatgtttggtatcaaaacactcgtgagagcatgcgcttcaatattcattaagaaaaagttgaaatatgtaaacaatatggccgccatatgcaaattagtccttccggatatatgccccattcacttcaagaggtaaatttggagcactgtttctcagcaaccgtgcaacctagcaagttgaaactttgcatgcagaatctatcatacagcctctaaaggatgttcaaagggcaacttaatcaatcaacatggctgaacaccatcagccaatcagcattcagcagacattttggcaggctgaatgttgcccaatctggatgatatttggcagttatgttcaggtggagacactgtagtgacctgcaaagtgctgaaacaatccacccactggggggcgctgttccaaaaaaacgagtatatgtcaatcatgctgtactattttgacatctaattgttttttgccatatttagtacagtggctctgacaaatttctcaatacaactatgtttaaaaagtgctttgttcattcataattgctaattgtttgaaaatagctatattgaaaactactctctggatatttggcctatcacctccatttcagtcttgctgcacactgtagagtctctaggtaaatgttcattaaaacatttgtgaatatttcacatacaatactctccaggcatcaagcaatctgtgcgtccttggaatttctaacctaaattgctgtaactctgcagtatttgctgtaatctcacaatgttaaagacctctgtacaatatcactctgatgaagcgccatttaatacagaactagattaagaataacttgacattacatgtcatatcagaacattcactcctttgtgcctcttctcaacattaataacaggtgaaagacttttgatcatttctaaatgtgacagggcatctccaatcatattagaccttcttacacatcaccatcctatgctctagtaggcaccattgtgccagttggtgcttgatgaagcgccatttaattcagaactagatttataataacttcgtaattacatgtcatatcagaacattcactcctttgtgttaatttaaacttgtttggtcaaacatttcagcttgttctgcaaaggttcaaaggtcaatctgaataccactttgtgaacattctggttgaagccacctgatcaataccaataacatgtagacaccttttgactagttctaactcacttaatgaatatcctacaaagttcactagatttacatgtgaatttaagcactgatcaggttgaaaggcctctgctcaacattaataacaggtgaaaaacttgataatttctaaatgtgacagggcatctccaatcatattagaccttcttacacatcaccattcaatgctccagtaggcaccattgtgcaagttggtgcttgaacccgatgattgccgcttgcggctatatttttattta
>TU144226
aaacctacttttgcaaactagtcctaggaattttgaccaatcctggcatgtttggtatcaaaacactcgtgagagcatgcgcttcaatattcattaagaaaaagttgaaatatgtaaacaatatggccgccatatgcaaattagtccttccggatatatgccccattcacttcaagaggtaaatttggagcactgtttctcagcaaccgtgcaacctagcaagttgaaactttgcatgcagaatctatcatacagcctctaaaggatgttcaaagggcaacttaatcaatcaacatggctgaacaccatcagccaatcagcattcagcagacattttggcaggctgaatgttgcccaatctggatgatatttggcagttatgttcaggtggagacactgtagtgacctgcaaagtgctgaaacaatccacccactggggggcgctgttccaaaaaaacgagtatatgtcaatcatgctgtactattttgacatctaattgttttttgc
>TU144230
caactatgtttaaaaagtgctttgttcattcataattgctaattgtttgaaaatagctatattgaaactactctctggatatttggcctatcacctccatttcagtcttgctgcacactgtagagtctctaggtaaatgttcattaaaacatttgtgaatatttcacatacaatactctccaggcatcaagcaatctgtgcgtccttggaatttctaacctaaattgctgtaactctgcagtatttgctgtaatctcacaatgttaaagacctctgtacaatatcactctgatgaagcgccatttaattcagaactagattaagaataacttgacattacatgtcatatcagaacattcactcctttgtgcctcttctcaacattaataacaggtgaaagacttttgatcatttctaaatgtgacagaatgtctccaattgtgttagaccttcttacacatcaccatcctatgctctagtaggcaccattgtgctagttggtgcttgatgaagcgccatttaattcagaactagatttataataacttcgtaattacatgtcatatcagaacattcactcctttgtgttaatttaaacttgtttggtcaaacatttcagcttgttctgcaaaggttcaaaggtcaatctgaataccactttgtgaacattctggttgaagccacctgatcaataccaataacatgtagacaccttttgactagttctaactcacttaatgaatatcctacaaagttcactagatttacatgtgaatttaagcactgatcaggttgaaaggcctctgctcaacattaataacaggtgaaaaacttgataatttctaaatgtgacagggcatctccaatcatattagaccttcttacacatcaccattcaatgctccagtaggcaccattgtgcaagttggtgcttgaacccgatgattgccgcttgcggctatatttttattta
>TU144232
gcagTCTGAGCGTCCTTGAAATTTtcaacctaaattgctgtaactctgcagtatttgctgtaatctcacaatgtcaaagacctctgtacaatatcactctgatgaagcgccatttaatacagaactagattaagaataacttgacattacatgtcatatcagaacattcactcctttgtgcctcttctcaacattaataacaggtgaaagacttttgatcatttctaaatgtgacagaatgtctccaattgtgttagaccttcttacacatcaccatcctatgctctagtaggcaccattgtgctagttggtgcttgatgaagcgccatttaattcagaactagatttataataacttcgtaattacatgtcatatcagaacattcactcctttgtgttaatttaaacttgtttggtcaaacatttcagcttgttctgcaaaggttcaaaggtcaatctgaataccactttgtgaacattctggttgaagccacctgatcaataccaataacatgtagacaccttttgactagttctaactcacttaatgaatatcctacaaagttcactagatttacatgtgaatttaagcactgatcaggttgaaaggcctctgctcaacattaataacaggtgaaaaacttgataatttctaaatgtgacagggcatctccaatcatattagaccttcttacacatcaccattcaatgctccagtaggcaccattgtgcaagttggtgcttgaacccgatgattgccgcttgcggctatatttttattta
>TU144233
caactatgtttaaaaagtgctttgttcattcataattgctaattgtttgaaaatagctatattgaaactactctctggatatttggcctatcacctccatttcagtcttgctgcacactgtagagtctctaggtaaatgttcattaaaacatttgtgaatatttcacatacaatactctccaggcatcaagcaatctgtgcgtccttggaatttctaacctaaattgctgtaactctgcagtatttgctgtaatctcacaatgttaaagacctctgtacaatatcactctgatgaagcgccatttaattcagaactagattaagaataacttgacattacatgtcatatcagaacattcactcctttgtgcctcttctcaacattaataacaggtgaaagacttttgatcatttctaaatgtgacagaatgtctccaattgtgttagaccttcttacacatcaccatcctatgctctagtaggcaccattgtgctagttggtgcttgatgaagcgccatttaattcagaactagatttataataacttcgtaattacatgtcatatcagaacattcactcctttgtgttaatttaaacttgtttggtcaaacatttcagcttgttctgcaaaggttcaaaggtcaatctgaataccactttgtgaacattctggttgaagccacctgatcaataccaataacatgtagacaccttttgactagttctaactcacttaatgaatatcctacaaagttcactagatttacatgtgaatttaagcactgatcaggttgaaaggcctctgctcaacattaataacaggtgaaaaacttgataatttctaaatgtgacagggcatctccaatcatattagaccttcttacacatcaccattcaatgctccagtaggcaccattgtgcaagttggtgcttgaacccgatgattgccgcttgcggctatatttttattta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144220 True 1518 lncRNA 0.38 2 28670587 28673936
TU144226 False 508 lncRNA 0.41 2 28667114 28671093
TU144230 False 973 lncRNA 0.36 3 28667659 28673936
TU144232 False 783 lncRNA 0.37 2 28669733 28673936
TU144233 False 973 lncRNA 0.36 3 28667659 28673936

Neighbor

gene id symbol gene type direction distance location
LOC111193463 NA coding upstream 667262 27993999 ~ 27999852 (+)
LOC103043862 mx1 coding upstream 761469 27890718 ~ 27905645 (+)
LOC103047315 LOC108440455 coding upstream 859030 27802084 ~ 27808084 (+)
arglu1 NA coding upstream 898847 27759212 ~ 27768267 (+)
LOC111193461 cpo,LOC108258336 coding upstream 909017 27745088 ~ 27758097 (+)
LOC111193464 NA coding downstream 15619 28689555 ~ 28692305 (+)
LOC111193465 NA coding downstream 18908 28692844 ~ 28697096 (+)
LOC111193466 NA coding downstream 28076 28702012 ~ 28702921 (+)
LOC111193571 NA coding downstream 112028 28785964 ~ 28791991 (+)
LOC111193468 NA coding downstream 137888 28811824 ~ 28815508 (+)
G106754 NA non-coding upstream 42916 28623971 ~ 28624198 (+)
G106745 NA non-coding upstream 88625 28578211 ~ 28578489 (+)
G106718 NA non-coding upstream 280672 28385478 ~ 28386442 (+)
G106710 NA non-coding upstream 366863 28299588 ~ 28300251 (+)
G106675 NA non-coding upstream 534842 28112477 ~ 28132272 (+)
G106791 NA non-coding downstream 52784 28726720 ~ 28727094 (+)
G106792 NA non-coding downstream 53350 28727286 ~ 28727720 (+)
G106795 NA non-coding downstream 60359 28734295 ~ 28734971 (+)
G106799 NA non-coding downstream 102610 28776546 ~ 28777037 (+)
G106800 NA non-coding downstream 104246 28778182 ~ 28778480 (+)
G106673 NA other upstream 600131 28066352 ~ 28066983 (+)
G106661 lancl1 other upstream 645067 28014516 ~ 28022047 (+)
LOC103037236 NA other upstream 2495313 26154417 ~ 26171801 (+)
LOC111193565 NA other upstream 3096293 25458815 ~ 25570821 (+)
LOC111193563 NA other upstream 3297675 25361744 ~ 25369439 (+)
LOC103027743 NA other downstream 29131 28703067 ~ 28724026 (+)
LOC111193573 NA other downstream 475129 29149065 ~ 29159680 (+)
G107117 NA other downstream 1106390 29780326 ~ 29780927 (+)

Expression


Co-expression Network