G106800


Basic Information

Item Value
gene id G106800
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 28778182 ~ 28778480 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU144297
tgaacacatgtggagttttatgtacttaacaaaaaatgagctgaacctccacagtcaccagacctgaacccaatccagatggtttggggtgagctggagcacagagtgaagaagacaaaggagcaacaagtgctaataaacacctctgggaactccttccttcaagactgctggaaaacttttcatttcaggtggccacctcttttagagaagctcattgagagaatgatgccaagagtgtgcaaagcagtaatcagagcaaaggggggctattttgaagaaactagaatataaaacat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144297 True 299 lncRNA 0.43 1 28778182 28778480

Neighbor

gene id symbol gene type direction distance location
LOC111193466 NA coding upstream 75261 28702012 ~ 28702921 (+)
LOC111193465 NA coding upstream 81086 28692844 ~ 28697096 (+)
LOC111193464 NA coding upstream 85877 28689555 ~ 28692305 (+)
LOC111193463 NA coding upstream 778330 27993999 ~ 27999852 (+)
LOC103043862 mx1 coding upstream 872537 27890718 ~ 27905645 (+)
LOC111193571 NA coding downstream 7484 28785964 ~ 28791991 (+)
LOC111193468 NA coding downstream 33344 28811824 ~ 28815508 (+)
LOC111193570 NA coding downstream 62699 28841179 ~ 28865225 (+)
LOC111193469 NA coding downstream 347393 29125873 ~ 29127641 (+)
LOC103024513 LOC107555266,LOC106574727,LOC106575573,LOC108429863,LOC107568777,LOC107709315,LOC107718016,LOC105889574,LOC100333907 coding downstream 430071 29208551 ~ 29241597 (+)
G106799 NA non-coding upstream 1145 28776546 ~ 28777037 (+)
G106795 NA non-coding upstream 43211 28734295 ~ 28734971 (+)
G106792 NA non-coding upstream 50462 28727286 ~ 28727720 (+)
G106791 NA non-coding upstream 51088 28726720 ~ 28727094 (+)
G106760 NA non-coding upstream 104246 28667114 ~ 28673936 (+)
G106803 NA non-coding downstream 30855 28809335 ~ 28865069 (+)
LOC111193572 NA non-coding downstream 34925 28813405 ~ 28814051 (+)
G106807 NA non-coding downstream 50819 28829299 ~ 28850608 (+)
G106817 LOC108258578,LOC108429866,LOC108258576,LOC107568776,LOC107653679,LOC107717913 non-coding downstream 175106 28953586 ~ 29063678 (+)
G106838 atp1a1a.4,LOC108429867,LOC108258577,LOC108429865 non-coding downstream 194252 28972732 ~ 28974394 (+)
LOC103027743 NA other upstream 54156 28703067 ~ 28724026 (+)
G106673 NA other upstream 711199 28066352 ~ 28066983 (+)
G106661 lancl1 other upstream 756135 28014516 ~ 28022047 (+)
LOC103037236 NA other upstream 2606381 26154417 ~ 26171801 (+)
LOC111193565 NA other upstream 3207361 25458815 ~ 25570821 (+)
LOC111193573 NA other downstream 370585 29149065 ~ 29159680 (+)
G107117 NA other downstream 1001846 29780326 ~ 29780927 (+)

Expression


Co-expression Network