G106817 (LOC108258578,LOC108429866,LOC108258576,LOC107568776,LOC107653679,LOC107717913)


Basic Information

Item Value
gene id G106817
gene name LOC108258578,LOC108429866,LOC108258576,LOC107568776,LOC107653679,LOC107717913
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 28953586 ~ 29063678 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU144349
CTTAAGAACAGGAATTTTGGACTGATCACCCAGAAAAGTAGCACGGTTGCACAGTCCAGCAACACGAGCCAGAGCCGACCATGTAGGAGAGCTTCTATCAAAGGCGGTTCCACTCTGGTTCTCTGTGGTGTCGGCTTCATGGATCTGGTTGTCGAACCACATGTGGGCCACAGTCATCCGGTTCTGGGTCAGGGTTCCAGTCTTGTCTGAGCAGATGGTGGAAGTAGAACCAAGAGTTTCCACAGCTTCCAGATTCTTCACCAGGCAGTTCTTCTTGGCCATTCGCTTAGCGGTTAGAGTCAGACAACAGTGACTGTAGCTAGTAGACCCTCTGGTACGTTGGCTACAATGATTCCAATAAGGAAAATCACAGCTTCCAGCCAACCATAACCAAGGATGAGAGACAGGATAAAGAAGGACACGCCCAGGAAAACAGCTACACCAGTGATGATGTGGATGAAGTGCTCGATCTCAATGTTGATTGGAGTCTGTCCAACTTCAAGACTGGATGCAAGGGTAGCAATGCGACCCATCACAGTGCGATCACCGGTGTTGATGACAATTCCTCTAGCAGAACCTGTGGAAGAATGATATAACCATCACATTTCTAATTCTTGTCTCATTTACCCATTGGATCCATGCAAGcctactttacatttttaaaggcCCTAAGATATAACCCTGGGGGACTCCACAAGATATACACACTGAATGGTAGTCACACTAAATGATAAATCTAAGAATCAATAgtgttatttttacagtttatctAGTTGGCTTCATACCTTCAACACAGTTTGTGGAAAAGAACACAATGTTTCTGGTTTCCAGAGGATTGTCATTGGAGAAGTCAGGAGTTCGGGTTTGAGGTTCTGATTCACCAGTTAGAGAGGAGTTGTCCACCTGCATCCGTGTGCGGAGATAATGCGCAGGTCAGCAGGGATTCGGTCTCCGCCCTTAACCTCCACAAGGTCACCAGCCACCACCTCCTCAGCATTAATGCTCTTCTTCTCCCCGTCTCGGATTACCAGGGCTTGTGTGGGACGAGGTTCTTAAAGGACTCCATGATCTTTGAACTTTTGGCCTCTTGATAGTAGGAGAAACATCCTGTGATCATGACCACAGCAGACAGCACGATACCAAGGTACAGTTATCATTGGTTGGTTCATCTTCTGAGGCAGCCTGGATTCCATAAGCCAGAAAGCAGAGAATAGCTCCAATCCACAGCAGCGTGGAAAACCCTCCAAACAGCTGCTTGCAGAACTTCACCCATTCTGGAGTAGTTGGCGGTGGGGTCAGAGCGTTGGGTCCATCCCGTGCAAGGATTTCTTTAGCACGAGTCGCAGATAAACCCTTAAAAATAGTACgaaaaagacttttaaaagaTTTGTTATTGGACATTTTGGTTAGAAAATGTGTAGTAAACGATAAACTGTGGAAAAATCAACTTACAAAAGTTAAAATGACTATTTTCATCAAGATCACCGAgcaaaaatcttaataaataagttttttttttttatgtcacatGCTTAAAAAGTCTACTGTGTAGTTTTAGCACAAAATATGAGTTTTATTCTTTAACAAAATTGTACAAAAAGTAATGTTTTATCTTGAGAAAATGATcaatcagtaaatatatatatatatat

Function

NR:

description
PREDICTED: sodium/potassium-transporting ATPase subunit alpha-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144349 True 1652 lncRNA 0.43 8 28953586 29063678

Neighbor

gene id symbol gene type direction distance location
LOC111193570 NA coding upstream 88361 28841179 ~ 28865225 (+)
LOC111193468 NA coding upstream 138078 28811824 ~ 28815508 (+)
LOC111193571 NA coding upstream 161595 28785964 ~ 28791991 (+)
LOC111193466 NA coding upstream 250665 28702012 ~ 28702921 (+)
LOC111193465 NA coding upstream 256490 28692844 ~ 28697096 (+)
LOC111193469 NA coding downstream 62195 29125873 ~ 29127641 (+)
LOC103024513 LOC107555266,LOC106574727,LOC106575573,LOC108429863,LOC107568777,LOC107709315,LOC107718016,LOC105889574,LOC100333907 coding downstream 144873 29208551 ~ 29241597 (+)
LOC103025657 runx1,LOC108429862,LOC107571884 coding downstream 353544 29417222 ~ 29519834 (+)
donson LOC107555241 coding downstream 474659 29538337 ~ 29558043 (+)
LOC103025432 NA coding downstream 499518 29563196 ~ 29588122 (+)
G106803 NA non-coding upstream 88517 28809335 ~ 28865069 (+)
G106807 NA non-coding upstream 102978 28829299 ~ 28850608 (+)
LOC111193572 NA non-coding upstream 139535 28813405 ~ 28814051 (+)
G106800 NA non-coding upstream 175106 28778182 ~ 28778480 (+)
G106799 NA non-coding upstream 176549 28776546 ~ 28777037 (+)
G106821 NA non-coding downstream 440 29064118 ~ 29073452 (+)
G106855 NA non-coding downstream 15722 29079400 ~ 29093440 (+)
G106856 NA non-coding downstream 48642 29112320 ~ 29113337 (+)
G106857 LOC105899807 non-coding downstream 54818 29118496 ~ 29118746 (+)
G106859 NA non-coding downstream 72297 29135975 ~ 29136449 (+)
LOC103027743 NA other upstream 229560 28703067 ~ 28724026 (+)
G106673 NA other upstream 886603 28066352 ~ 28066983 (+)
G106661 lancl1 other upstream 931539 28014516 ~ 28022047 (+)
LOC103037236 NA other upstream 2781785 26154417 ~ 26171801 (+)
LOC111193565 NA other upstream 3382765 25458815 ~ 25570821 (+)
LOC111193573 NA other downstream 85387 29149065 ~ 29159680 (+)
G107117 NA other downstream 716648 29780326 ~ 29780927 (+)

Expression


Co-expression Network