G106819


Basic Information

Item Value
gene id G106819
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 29052531 ~ 29058905 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU144359
cTAATATAAGTATATTGAGTAAACTCTTTGGCTAGTTCAACTCAGTAAAACGGAGAATTTAAAGAACTTCCACCTAAAACCTGAAAGTGTTTCTTGAGCCTTATCAGAAAAAGGGTTTTCAACtaactttaaatatactatGCATGTGCTAAGGCTCTTTCCTTAGTGCCTCCTCCCTTACTTGTCATCAGTTTTTGCTGTCTGTCACCCCAAGCTATCATCTCCTGGGTGTGCATTtgtgtgcatttattttatagtgtATATTAGAAAGCTGCCCGGCTtgagtgttgtaggctgtaagagcaagtcacCTTAATTCTGTGTTGGCCTGGTGCTGCAGTGCTTATTCTTGTGGTAATAATTCAATTCAACATTTTGAGTCTTTACAACTTCAAATCACAATTTCTGACCTGAGTAAAGTAAAATTTAGTCTACAAACACTGCTTTACCTTGATTCCAGCACTTCTGCATTTCCCCACAGCATCTGGTACAGCAGCACGAGGAGGATCAATCATAGACATCAGACCAACGAAGCACAGGTTCTCAGTGGGGAAGTTCACCTCCTCAGTATCGAATGCAAAGCCATCAGGGAACTGATCATCAGGGAGGCTGAAATGgcaaaaaACCTAACACTCTTTCCCCAAGACCTCCCAGCTCTACATAAGCATTCTGGAAAGAATCCTTCAGTTCATCGTCCAGAGTCTGCTCTTTTCCGTGAAGCAAAATAGTCGAGCATCGGTCCAGGATCCTTTCAGGGGCTCCCTTCATTACCAGCAGGTGCTTAGTCTCTGAGGAGTTGGAGTTCTTGTGGATTGAGAGCTG
>TU144361
attgCTTATCTTACAAAATGGGCATAATGAAAATGTATGCACATTCACAATGATGTATTCAATTAATGAATCAATCcatcaaacaaacagacaaacagacagacagacagacagacagacagacacatgttCTTGTGTAAACTTACTTGAGTGGATACATTCTGAGGGCAACATCCATGCCTGGGCAGTAGGACAGGAAGGCTGCCAGAGCCGTTTCCTCAAACAGCCCAAATATTAAGATTTTGTTTTCATTCCCTGCTGTAAGATGGAATTCCTCCTGGTCTTACAGATGATCAGATCGGCCCACTGCACAATCACAATACTGGCGAAGAACGCAGTGTGACACGTGTACTCTACGATCTTTCTGCGCTCGTACGTCTgtaacagtgataataaaatgattataataTAACAGTCTAGTGTAAAACTGATAATCAGAATTTTACATTTCTGATAATCTAATAAAATGTGCTCTACGCACCCACTGCTGTCCGTAACTGTCCTCTAAATCATTGTGAAATTTATCATCCCAGTTCACACGCAGGCCTATCAGATCCCCAGGCAGGAAACCGTTCTCAGCCAAGATCACAAAGTAGGTGAAGAACCCTGCAGTAGCTTGCATCATTCctaaaagacaaagaaaaaacagatattAGAATGAaagatcaattttttttataacatgttttttaattatgttttataatttaattttataaaaggtcATAATAAATTCTCCTACCAATCTGCCCATAAGCCATACTGATGAGCCTTTCATTCACCAGCTTGTCTGTTTTAGCATTTCTGGGCTGTCTCTTCATGATGTCACTCTCAGCAGCTTCGTAGGCCAATGAAATAGCAGGTacctataatatataataaaaaatatatatatacttattgcATGATTGTCTTTACACTCACACAACCAGGGGCATCGCTAGCCTTTTATAGGGGCACTGAAGCATCTCTAAAAGAAGTATCAGCTCCCCGAAAAGTGAAAGCagatgttgtgtttttgtttgatttgtaaACAGAAGTTAGTATCTGATAAGCTTAACAGGTTCCGATCTGATACAGACAAAggatttgtaaatgtaaaaaatataaatccaTTTCTAAAACtaagtttatttccattgctacagACGAGCTGTAATCTGTTAAACAATTCattgtttgctaaaaatcacccccccccccttttttttaaacaatatacaatatacaatatacatttacattgttttgttttttagttaatttgttttccttaaagcCCTGGCAGTTTACGTTAgtttacactggattttgtacaaAATAgcagtgttctaaaacttttgaccggcaGCGTAAGTATACTAAATGcaatttacaaatgtatttattttgttgtcagtatctatttatattattattaatcagatcACTTTATTGCAACTATTGCAACTTTATTAGTTACAAACGTTTTCTGGGAAATGTTTAGAATAGTTTGAGTGTTCTTAAGCAGGAGGTTGTAGGATTACAGAAGCCTATTGCTGCCAATTACTATTAAAAAATCATTAGTATGTCATTATCATGAGATCTTATGTCATAGttctaaaataaacatattctaATTAGGAGAACATGTCATAATTATGCGATATTATGTCATAAAAATGACCTATACAACATCTCGTTATTATAaagtaaaaagtttaaaaatgttggtatTTGGGGGGTTTAgcgcctctctggtgagaatgggtaattgcactgagcatgcggaagaatcattttaaacttggtgggtgtgatgcggcctcctttcagagtggatgaatccgattccaggttatgttcagtcagagagaaagagagaagagctcagtcagaaacttcactccttcgtttctttggttttactacgagtgaatgagctactgagctctgagtttcctcttctgaagtctccattgctccaccagccgctcgcgttcagtaaaactgagccagatcctcttttaaaggctgtacatgtgacgtaattACGTGAAGACGTTAAGATGCCATTTTggttatgaaataaacatcttgTATTTATGATATAATGTCATAACTGCAACATATTTAATTATAACCTAATACTGTATCTCGCAATAACaagatactttctcataattacgagGTGTTTTATGTCATAATTACATCTTATATCTTTAAGACATAATATCTCTAATAATAATTAGATGTGTATTTCATGATTATGGGATAATATCTTGTaataacgttttttttatttctcctttaGGCCTGCTTACCATGTCAGTTCCCAGGTCAATACACAGAATGGTGACAGTGCCCAGAGGAAGAGGAATGTTGGcgatgatgaagaggaggaaAGGTGAGATCTCAGGAATGTTACTGGTCAGGGTGTAGGCAATAGATTTCTTCAAGTTGTCAAAAATCAGACGACCTGGGGAGGAAATgatagttttaaaaatatataaatggttTCAACAAAACATTTAGGATCCAAT

Function

GO:

id name namespace
GO:0022857 transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144359 False 822 lncRNA 0.43 2 29057319 29058905
TU144361 True 2522 lncRNA 0.35 3 29052531 29055183

Neighbor

gene id symbol gene type direction distance location
LOC111193570 NA coding upstream 187306 28841179 ~ 28865225 (+)
LOC111193468 NA coding upstream 237023 28811824 ~ 28815508 (+)
LOC111193571 NA coding upstream 260540 28785964 ~ 28791991 (+)
LOC111193466 NA coding upstream 349610 28702012 ~ 28702921 (+)
LOC111193465 NA coding upstream 355435 28692844 ~ 28697096 (+)
LOC111193469 NA coding downstream 66968 29125873 ~ 29127641 (+)
LOC103024513 LOC107555266,LOC106574727,LOC106575573,LOC108429863,LOC107568777,LOC107709315,LOC107718016,LOC105889574,LOC100333907 coding downstream 149646 29208551 ~ 29241597 (+)
LOC103025657 runx1,LOC108429862,LOC107571884 coding downstream 358317 29417222 ~ 29519834 (+)
donson LOC107555241 coding downstream 479432 29538337 ~ 29558043 (+)
LOC103025432 NA coding downstream 504291 29563196 ~ 29588122 (+)
G106822 NA non-coding upstream 78 29050435 ~ 29052453 (+)
G106838 atp1a1a.4,LOC108429867,LOC108258577,LOC108429865 non-coding upstream 78137 28972732 ~ 28974394 (+)
G106803 NA non-coding upstream 187462 28809335 ~ 28865069 (+)
G106807 NA non-coding upstream 201923 28829299 ~ 28850608 (+)
LOC111193572 NA non-coding upstream 238480 28813405 ~ 28814051 (+)
G106821 NA non-coding downstream 5213 29064118 ~ 29073452 (+)
G106855 NA non-coding downstream 20495 29079400 ~ 29093440 (+)
G106856 NA non-coding downstream 53415 29112320 ~ 29113337 (+)
G106857 LOC105899807 non-coding downstream 59591 29118496 ~ 29118746 (+)
G106859 NA non-coding downstream 77070 29135975 ~ 29136449 (+)
LOC103027743 NA other upstream 328505 28703067 ~ 28724026 (+)
G106673 NA other upstream 985548 28066352 ~ 28066983 (+)
G106661 lancl1 other upstream 1030484 28014516 ~ 28022047 (+)
LOC103037236 NA other upstream 2880730 26154417 ~ 26171801 (+)
LOC111193565 NA other upstream 3481710 25458815 ~ 25570821 (+)
LOC111193573 NA other downstream 90160 29149065 ~ 29159680 (+)
G107117 NA other downstream 721421 29780326 ~ 29780927 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 misc CM030128.1 CM030128.1 17364798 ~ 17487050 (+)
tiger barb (Puntius tetrazona) G59902 dtx1,LOC107692206,LOC107572068,LOC107671029,LOC101885597 non-coding NC_056706.1 CM032075.1 1401759 ~ 1494731 (+)