G106838 (atp1a1a.4,LOC108429867,LOC108258577,LOC108429865)


Basic Information

Item Value
gene id G106838
gene name atp1a1a.4,LOC108429867,LOC108258577,LOC108429865
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 28972732 ~ 28974394 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU144383
ataaaaagctcagagaaacagagaaaacataCAACCCCTTACCTCCTGGGTTTCGCCTTAGAAGGTATCTTCTTGCCTCATCATAGAAGAAGATCAGGAATGCGTATGGGACAGCACATAATAACCACAAAGGCTTGAGTGGATACATTCTAAGGGCAACGTCCATACCCGGGCAGTAGGACAGGAAGAGTGCAAGTCCTGCCTCCTCAAATAGGCCAAATATGAGGACTTTGTTTCGGCTCATCCCCTGTTGTACTATAGAATTGACCCTG

Function

symbol description
atp1a1a.4 Predicted to enable P-type sodium:potassium-exchanging transporter activity. Predicted to be involved in cellular monovalent inorganic cation homeostasis and inorganic cation transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; immature eye; integument; nervous system; and pronephros. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2DD. Orthologous to human ATP1A1 (ATPase Na+/K+ transporting subunit alpha 1).

NR:

description
PREDICTED: sodium/potassium-transporting ATPase subunit alpha-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144383 True 272 lncRNA 0.46 3 28972732 28974394

Neighbor

gene id symbol gene type direction distance location
LOC111193570 NA coding upstream 107507 28841179 ~ 28865225 (+)
LOC111193468 NA coding upstream 157224 28811824 ~ 28815508 (+)
LOC111193571 NA coding upstream 180741 28785964 ~ 28791991 (+)
LOC111193466 NA coding upstream 269811 28702012 ~ 28702921 (+)
LOC111193465 NA coding upstream 275636 28692844 ~ 28697096 (+)
LOC111193469 NA coding downstream 151479 29125873 ~ 29127641 (+)
LOC103024513 LOC107555266,LOC106574727,LOC106575573,LOC108429863,LOC107568777,LOC107709315,LOC107718016,LOC105889574,LOC100333907 coding downstream 234157 29208551 ~ 29241597 (+)
LOC103025657 runx1,LOC108429862,LOC107571884 coding downstream 442828 29417222 ~ 29519834 (+)
donson LOC107555241 coding downstream 563943 29538337 ~ 29558043 (+)
LOC103025432 NA coding downstream 588802 29563196 ~ 29588122 (+)
G106803 NA non-coding upstream 107663 28809335 ~ 28865069 (+)
G106807 NA non-coding upstream 122124 28829299 ~ 28850608 (+)
LOC111193572 NA non-coding upstream 158681 28813405 ~ 28814051 (+)
G106800 NA non-coding upstream 194252 28778182 ~ 28778480 (+)
G106799 NA non-coding upstream 195695 28776546 ~ 28777037 (+)
G106822 NA non-coding downstream 76041 29050435 ~ 29052453 (+)
G106819 NA non-coding downstream 78137 29052531 ~ 29058905 (+)
G106821 NA non-coding downstream 89724 29064118 ~ 29073452 (+)
G106855 NA non-coding downstream 105006 29079400 ~ 29093440 (+)
G106856 NA non-coding downstream 137926 29112320 ~ 29113337 (+)
LOC103027743 NA other upstream 248706 28703067 ~ 28724026 (+)
G106673 NA other upstream 905749 28066352 ~ 28066983 (+)
G106661 lancl1 other upstream 950685 28014516 ~ 28022047 (+)
LOC103037236 NA other upstream 2800931 26154417 ~ 26171801 (+)
LOC111193565 NA other upstream 3401911 25458815 ~ 25570821 (+)
LOC111193573 NA other downstream 174671 29149065 ~ 29159680 (+)
G107117 NA other downstream 805932 29780326 ~ 29780927 (+)

Expression


Co-expression Network