Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC111193573 |
| gene name | NA |
| gene type | misc |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035908.1 |
| NCBI id | CM008311.1 |
| chromosome length | 31403898 |
| location | 29149065 ~ 29159680 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| id | name | namespace |
|---|---|---|
| GO:0050879 | multicellular organismal movement | biological_process |
| GO:0050881 | musculoskeletal movement | biological_process |
| GO:0003009 | skeletal muscle contraction | biological_process |
| GO:0003010 | voluntary skeletal muscle contraction | biological_process |
| GO:0031444 | slow-twitch skeletal muscle fiber contraction | biological_process |
| GO:0014721 | twitch skeletal muscle contraction | biological_process |
| GO:0036379 | myofilament | cellular_component |
| GO:0005861 | troponin complex | cellular_component |
| GO:0005865 | striated muscle thin filament | cellular_component |
| id | description |
|---|---|
| ko04974 | Protein digestion and absorption |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU144492 | True | 668 | lncRNA | 0.42 | 3 | 29149090 | 29159680 |
| XM_022674953.1 | False | 537 | mRNA | 0.45 | 3 | 29149065 | 29159524 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC111193469 | NA | coding | upstream | 21424 | 29125873 ~ 29127641 (+) |
| LOC111193570 | NA | coding | upstream | 283840 | 28841179 ~ 28865225 (+) |
| LOC111193468 | NA | coding | upstream | 333557 | 28811824 ~ 28815508 (+) |
| LOC111193571 | NA | coding | upstream | 357074 | 28785964 ~ 28791991 (+) |
| LOC111193466 | NA | coding | upstream | 446144 | 28702012 ~ 28702921 (+) |
| LOC103024513 | LOC107555266,LOC106574727,LOC106575573,LOC108429863,LOC107568777,LOC107709315,LOC107718016,LOC105889574,LOC100333907 | coding | downstream | 48871 | 29208551 ~ 29241597 (+) |
| LOC103025657 | runx1,LOC108429862,LOC107571884 | coding | downstream | 257542 | 29417222 ~ 29519834 (+) |
| donson | LOC107555241 | coding | downstream | 378657 | 29538337 ~ 29558043 (+) |
| LOC103025432 | NA | coding | downstream | 403516 | 29563196 ~ 29588122 (+) |
| LOC111193470 | NA | coding | downstream | 496857 | 29656537 ~ 29658422 (+) |
| G106859 | NA | non-coding | upstream | 12616 | 29135975 ~ 29136449 (+) |
| G106857 | LOC105899807 | non-coding | upstream | 30319 | 29118496 ~ 29118746 (+) |
| G106856 | NA | non-coding | upstream | 35728 | 29112320 ~ 29113337 (+) |
| G106855 | NA | non-coding | upstream | 55625 | 29079400 ~ 29093440 (+) |
| G106821 | NA | non-coding | upstream | 75613 | 29064118 ~ 29073452 (+) |
| G106954 | NA | non-coding | downstream | 162865 | 29322545 ~ 29323347 (+) |
| G106992 | NA | non-coding | downstream | 207006 | 29366686 ~ 29367170 (+) |
| G106993 | NA | non-coding | downstream | 207686 | 29367366 ~ 29367681 (+) |
| G107012 | NA | non-coding | downstream | 244206 | 29403886 ~ 29404268 (+) |
| G107014 | NA | non-coding | downstream | 246308 | 29405988 ~ 29406309 (+) |
| LOC103027743 | NA | other | upstream | 425039 | 28703067 ~ 28724026 (+) |
| G106673 | NA | other | upstream | 1082082 | 28066352 ~ 28066983 (+) |
| G106661 | lancl1 | other | upstream | 1127018 | 28014516 ~ 28022047 (+) |
| LOC103037236 | NA | other | upstream | 2977264 | 26154417 ~ 26171801 (+) |
| LOC111193565 | NA | other | upstream | 3578244 | 25458815 ~ 25570821 (+) |
| G107117 | NA | other | downstream | 620646 | 29780326 ~ 29780927 (+) |
