G107056


Basic Information

Item Value
gene id G107056
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 29595038 ~ 29597014 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU144660
TCAGTTTTGAAGTCAATAACAATGGGCTCTACTGTGCCCTCCCTGTGTTTGCCGAGGCCTTCTCCAGCACGCCAACCCATCTTCCTCATCAGTAACTCTCCCATGCCCCCGGAGACTGGCGCAGCTCGAAGGAACTGGTCCTGAATGAAGTGGGGACAGATACGGGCAgaagaagacagaaagagagaaagaaggcaGACAAGCAAAGAGGAAATAGTAAGATCTCCCACCAACAGAAAACGGTAAATCATTAATACAATTCTGAAAATTAGGACTGAACATCTACTGGGTATCTGATTGAGTACcacaaacatatattttgaagggggggaaaaaaaacaggaaatataaTTGTTTAATACCCTAGATATAATTTCTCAGTAGATAATACTATAAGTAGATACGTAGTGTAGGAAGTATATTGTGCATTGTTTAAttgcacaaataaatataaactaaaatgataaaagtactATGAAACAAGTAGTTGTACACGgaacaagcataacattatgaccaactCCTGGTTTTTCATATAGTTTCACTTTACAGTCTTTAtgtttctctacatactttattattatcctccttttaccctgttcttcaaaacTCAGAATCCcaaaaaatactgtgtttaatctctctctctgtcctccacactattacacactcctacctacagctgaaacaccttgtagataaagtaaaatccgagacagaagatctgaatctgctgctgcacattttacagttttgaTCATAAGTTCTTAATGTTCTCAATTCTCTAGTTCTTAATCACTGCCCACAAGACACTGTTGGGGAACTATTCTCAGCCAGTAGTGACACTGTtcaagaactccagcagcactgctgtgtcagtGCCACtccagtgctgagaataacgacccaccacccaaaaaaTAATAgctgtggggtcctgagtattgaagaacagggtgaaaggaggaggataataaagcatGCAGAGAAACATATACAGGAATACAGTCAGTAATTATAATAGAACTACATGTTGTCCAATATGAACAGTGGAGGATAGGTTATAAAATGAAAAGgtggtcataatgttatgcttgaacAGTTTATAATTATAGTAAAGTATGTGGAAAAAAGAtcagtatttttaaaattatgtcTATACTAAAAATTATACAGTTTTCCATTGATAAGGCATCAAAATACCACCTTTGCCAAGGTATCAATACCCTTGGTTCAGCTGAAACACACAGAAGAGCATGGCAGAAAGCGTTTATCAGAGCGGACACAAAATCCACATGAATAGAAAGAGGGTGCTGGATGACGTACGTACCTAGGCCCCCATCATCCGCTCTGCATCTGACGAGAATAGAAGGGGCCTGACAGTGACCATGGCAACAAGGCAGCTACAAGGACTGACCCTGCAACAAGTTTCCATATAGAGGGGTGAGAGTTCACAGGTCAGACTGTGAACCCCCACCCCTCTGGCGTTCGTgccacaccacaccccaccaCTGCCCCACCCCCCGCCACCACTCTCACCAGCAGGGTAAAACAGCGCAGCGGTTTGAAACCCTGCACTGAGACATGTTCACACTGACAATGGATGCCGAACCACTGTTAAAACCTCCAATCCATAACACATCAAACATTCCTTAAACCAGTCAATAAATACAAGTAAATCCGAACACATTATCGTTATTATAAAGTTACTTTCCAGAAAGTTTATGCGGGCTTTGAATTTGATTCAAATGAGCCATTTGTGTTATTTAACCAAACTTTTAAGCATTTAGGGGAGTATGTATGTGATACCACAGTGGCATGCAAAAGAttggaatatatatttttaaggcgcattatgcaacacttgtaaggaacaggggtgtcgccaatTTTTCCtgctaattcagcaggtctagcTGCTGGGTGGtaactaagttaaata

Function

NR:

description
PREDICTED: filaggrin-2-like isoform X19

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144660 True 1942 lncRNA 0.41 2 29595038 29597014

Neighbor

gene id symbol gene type direction distance location
LOC103025432 NA coding upstream 6916 29563196 ~ 29588122 (+)
donson LOC107555241 coding upstream 36995 29538337 ~ 29558043 (+)
LOC103025657 runx1,LOC108429862,LOC107571884 coding upstream 75204 29417222 ~ 29519834 (+)
LOC103024513 LOC107555266,LOC106574727,LOC106575573,LOC108429863,LOC107568777,LOC107709315,LOC107718016,LOC105889574,LOC100333907 coding upstream 353441 29208551 ~ 29241597 (+)
LOC111193469 NA coding upstream 467397 29125873 ~ 29127641 (+)
LOC111193470 NA coding downstream 59523 29656537 ~ 29658422 (+)
ncam2 ncam2,LOC107721821,LOC107698913,LOC107751079 coding downstream 247086 29844100 ~ 30451601 (+)
LOC111193471 NA coding downstream 943247 30540261 ~ 30547361 (+)
LOC111193577 LOC108429857,LOC108258902 coding downstream 1064985 30661999 ~ 30668744 (+)
gart gart coding downstream 1075138 30672152 ~ 30711252 (+)
G107044 NA non-coding upstream 19691 29525655 ~ 29575347 (+)
G107014 NA non-coding upstream 188729 29405988 ~ 29406309 (+)
G107012 NA non-coding upstream 190770 29403886 ~ 29404268 (+)
G106993 NA non-coding upstream 227357 29367366 ~ 29367681 (+)
G106992 NA non-coding upstream 227868 29366686 ~ 29367170 (+)
G107057 NA non-coding downstream 244 29597258 ~ 29600584 (+)
G107064 NA non-coding downstream 18264 29615278 ~ 29621512 (+)
G107074 NA non-coding downstream 58897 29655911 ~ 29656234 (+)
G107075 NA non-coding downstream 77082 29674096 ~ 29674334 (+)
G107094 NA non-coding downstream 87072 29684086 ~ 29684364 (+)
LOC111193573 NA other upstream 435358 29149065 ~ 29159680 (+)
LOC103027743 NA other upstream 871012 28703067 ~ 28724026 (+)
G106673 NA other upstream 1528055 28066352 ~ 28066983 (+)
G106661 lancl1 other upstream 1572991 28014516 ~ 28022047 (+)
LOC103037236 NA other upstream 3423237 26154417 ~ 26171801 (+)
G107117 NA other downstream 183312 29780326 ~ 29780927 (+)

Expression


Co-expression Network