G107057


Basic Information

Item Value
gene id G107057
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 29597258 ~ 29600584 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU144662
GCTGCCtggcagcgctacactgaggaaccccgagtgttccggtaacccagggtaatgtcagctaGCAGTTCATTTTTACGCTCTGGCTGCTTTCCAGGACTAGGGTAGTAACTAAAGTATCTAAATTCATTACCAAatctgcactgctgaggtaaacataTTGTCTCTTATTGGTATGCCTGCTGTGATATTAGAAAAGAttcagtgtttaatatttagctGTAGGTTTGTTATTgcttcttctttaaaaagtaagaaaaattttttttctatatttggaTGCATTTTTTGCAGTACTTAGTAATGCACCCTTTGACAATTTTTACAAGACTTCTAAATGTATTTACGGGGATTGTCATCCATTCTTTCTCAAAAACGTTTAGTCATCACTTTATTACAGACAGTGTGAGGTCTTCTCATTTACTCAAAGTAgcaaaaaaaggttattttacaGGGGTTCCCAGACTTTTGCATGTCACTGTGtcatcaaaacaataaaataatggcTGAAATTGGTCAATACCAATGTCATATTCTAGACTTTTTTTGGTATCAGTATTGAAAAAGTTAAAAtgcaacaacaataataatagaaataatattttgatatactGTGCACTCGTAACTTAGCCTCCCACTCCATGATACAGGCATGTTTTGTCCTGTTCAGCTTTAAACATGTGACTAATTTACATCCAGCTCGCAAACTAAGTGTCAAACACTGTCAGTGTGCAACATCTCAGGAGCTTATGGAGCTTTTTTTGATGAACTGGCCTGTCCAGAATGCCATGACTACAGTCTAAGTCTGTGTGGTTACTAAGCAAAGTTGGCCATGTCAGAAGGACAGCACTGATCAAACAGACTGAGTGGCTTCTCTGGGAGTGTGAATGCCATGGCATCTCTCCGTAGAGGGTATGGCATTTCTCTGCTATTTATTTAGCTCAAAAGAACTCTATATAAAAAACGTGGGATTACCACAGTCAGATATAAAGATCAGGATTGTGTTACGCAGTAGTCAGCATCCAAATGCCTTCAAGACAATACGGCTTTTACCTAAAATAAGAACTATCATACATGGAAGGGCTGGATGAGCAACATACATTTATTAACATCTGAATTTAAAGTCTGCTGGGTGGAATAAAATAACTCTAAAtttgacaataaaataaaaaaaataactattcaCTTCgttccatatattttttctccttttcatttatcattttttttacccattttgaGTTTCCATTCTCAACCAAGAGGAGGTTGCCAGGAGACTTCAAGTCCTCTTCCTTCATCCCCTCTTTCAAAGAAGATTTTCTAAGTAGACTATAGTCAACCTCCCCTCCTGCATTGCACCTGCTACAATAGAatttcacacaaaaacacacctcTGCATGACTTTGCTGAAAAGATGTACCCACTCCACACATATCAATGAGTTTAAGATCTATAAATGAAGGGTATATAAAATCCAGGTAATGTAAATccatatttaaagcagcattatacaagaatttgcatttttttttaaataggctccccctacaggtgGACAGTGCAACTGACTGCAGTACAGTACATCTGCACTTGCAGGCACATGTGAAACTAAAAAATAACTCAAAGCAAATGTTGCAAGGATGCCAGAATATGAGAATTAATTTTGTaatctgttcccctatcctacctatCCTATTCTTTGTGCTTGTTAGTTGACTTATTGTGGCTTAATTTAAAGcgccactaggtaggattgagattttgtgctcgtgggctccccctacagttgtagagtgtaataaatgtttcaggcggattagtttctctttctcgttttctggctttcacagacatattcggtctctttccagcttctgccagagtgtctgtgtgttagtttgtaaacaatgaaccagtagtccttgtagaactgttagaactaaaggtcggaaagcagatcgcagttctcgcgagcgttggtcgcggccgcctcagaaaacttacagagtctggtttgagctcagaggagctccggcacagacacgagagcacctctattcctcctattacacctcaatgcagcgctgcagtgagtttcaagctgtaattttacttctttaaaaagatcaaaaatctaagaaattctacctagtggggctttaaagTTGGCAGTGCCagagaactacctgaaggtactgtgtgtataaacagtgtttttaaataaactatctgtgcactttcaaagttctcagtatTAGGGTTGggtatcattttatttgttaaattgtTGATACCGATATAATACTTTGAATTCGACACTGATATCCAAACAATACTTTTCGATgtctttttctaaaatgtaaccaaaaaaaGGCAGCCTGTAGCTGAATGACAGCTGGGTGTAAATGGGCAAGTTATTCCGCCCCAGATGATGTGGATGAACGCAATAGAGACacattacagtgtttttttaaaccaatatgACTCAGGTAAAGCAGTTCTTTGCCCTCATTTGCCCCCTGAAACCCCTTCAGGGTTTCTGAAACTGGAATGACAATGACAGTGACTCCATTCTTCTTACTACCAAGTTAGTAGCGCAACATAGTAGAGCAAAATAATTTTCTAGCTCATATTGTAAAGTTTAAATtctacataatgctgctttaatggtTATAGCCATTTAACTTCCAACCATAGAATGCTtccatattgatttttttttttatattgagaaGTTACTAGCTACCTTACCAGAAATATCTCATTAAAAGTTATTTCTGGCTGCATCTTGGTTGCCAATATGGGCTGAGCAAAGCTTGGCCTTTGAGATTTAGTGTATATTACTGATTGTTGGGACAGTGGAGTGGGTACACCAGGTAGCAAAGACACACCAGGTATCAGTGCATCTCTGACGAGATGAAAGCTGGTGGGATGTCATTTCATTATCCATGTTTCTCCTTTGTTACATGTATACTCTTAGGTGAATTCAACACAAAGGAAATAATGATGTTAGGGTATGAGTGACATCTTCTCATCTCTTACTGTACGTGTTAAACCTACCTTACTCTACACAAACACTGTAACTCAAACACATTTACTATAAAAACAAACTCAACCATCACACAGACCcagtgctccatccaatacagGGATGATGGAGCATTGCTTTACCTTCTTGATCCAAGCCTGTGGGCCACTGTTGGACAGCTCTTCAGATGAAAGCACCTGAGCACCGGTGGAGCCAGTGAAAAGACCAGGGATTGTGTTAGACTGGGCCCAAGCATCCacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144662 True 3289 lncRNA 0.39 2 29597258 29600584

Neighbor

gene id symbol gene type direction distance location
LOC103025432 NA coding upstream 9136 29563196 ~ 29588122 (+)
donson LOC107555241 coding upstream 39215 29538337 ~ 29558043 (+)
LOC103025657 runx1,LOC108429862,LOC107571884 coding upstream 77424 29417222 ~ 29519834 (+)
LOC103024513 LOC107555266,LOC106574727,LOC106575573,LOC108429863,LOC107568777,LOC107709315,LOC107718016,LOC105889574,LOC100333907 coding upstream 355661 29208551 ~ 29241597 (+)
LOC111193469 NA coding upstream 469617 29125873 ~ 29127641 (+)
LOC111193470 NA coding downstream 55953 29656537 ~ 29658422 (+)
ncam2 ncam2,LOC107721821,LOC107698913,LOC107751079 coding downstream 243516 29844100 ~ 30451601 (+)
LOC111193471 NA coding downstream 939677 30540261 ~ 30547361 (+)
LOC111193577 LOC108429857,LOC108258902 coding downstream 1061415 30661999 ~ 30668744 (+)
gart gart coding downstream 1071568 30672152 ~ 30711252 (+)
G107056 NA non-coding upstream 244 29595038 ~ 29597014 (+)
G107044 NA non-coding upstream 21911 29525655 ~ 29575347 (+)
G107014 NA non-coding upstream 190949 29405988 ~ 29406309 (+)
G107012 NA non-coding upstream 192990 29403886 ~ 29404268 (+)
G106993 NA non-coding upstream 229577 29367366 ~ 29367681 (+)
G107064 NA non-coding downstream 14694 29615278 ~ 29621512 (+)
G107074 NA non-coding downstream 55327 29655911 ~ 29656234 (+)
G107075 NA non-coding downstream 73512 29674096 ~ 29674334 (+)
G107094 NA non-coding downstream 83502 29684086 ~ 29684364 (+)
G107096 NA non-coding downstream 96118 29696702 ~ 29698661 (+)
LOC111193573 NA other upstream 437578 29149065 ~ 29159680 (+)
LOC103027743 NA other upstream 873232 28703067 ~ 28724026 (+)
G106673 NA other upstream 1530275 28066352 ~ 28066983 (+)
G106661 lancl1 other upstream 1575211 28014516 ~ 28022047 (+)
LOC103037236 NA other upstream 3425457 26154417 ~ 26171801 (+)
G107117 NA other downstream 179742 29780326 ~ 29780927 (+)

Expression


Co-expression Network