G107096


Basic Information

Item Value
gene id G107096
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 29696702 ~ 29698661 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU144730
ttttaggcgcttttcagattttctatttctattttttatttttagatccataaaatgatatatttatgtGGATGAAGTGTTTTAGTAGCTCTATATTCTGCTATTAGAAGTTTTAAAAtcaccatgtaaaattataaactgctccctAGATATGATAGAGATCTGAACCTGGGATGGTCCTTTCTTTCtgaaaaggactggaaactttagaagaataaaaactattaattttataacttatttcGCAATAAAGAAGGTCTCTCAGCCTGTTCTCTCCCTATAGAATAGACCCGCTGGAGCAGATTTTCCAGAGGGAGGGGGGAGCGCTCTCAGAGTGTCCGGTTTCAGAGCGGGCTTCACCTCTGTCCCACAtaactcgccacctgattggctgacagaatGTAGGGGGGCAGAGCGGGGCTCTCAGTCTGCCCAACTACCATGGTAACACGCATGCGCAGTTTGATCGCTCCAGAACAAAGGGAAAGTCTCAGAACACAGCGCTGGAGTTTCCAATAGTTTTAATCTGCGTCGGATTTATAAGAGCGCTTCTCAGACATAAATGGGGATTATTGgggactggattgatggattttctgaTGGTTGGGTGGATTCTGAAGCCAGTGCTCTCAGGTAGGTGCTGATTCGCTCTGTTTGGGTGTGGGGGGTGTTCTGCAGGTACCCCGGGCGGATCAAAGAGCGTGTTTTTATCACAAACCGGACCGTCTAGCGCACGCTTTCAGCTCTAAAACGAAATACAGCTAAATGTGACTGAAAAGTAGAGATTcttagctttaaaatggcatattgggtgtctatattgagcctATACTTActcaaacacagccagatatgaattatgatatttttctggcccgccggcgggacAGGGCGTGTTAATACTAGAGACCTGCGCGGGACAGCATTTCCAGTCCTGCTCCcgcaaaaaaaatatgattttcagTCCCACTCCCGCCCGCAATTCCCGCATGATTCCGACGTTCGCGTTACTGCTCAAGGCAGTTCTTGTCATTGGCTTGAGGAATTAAAAGTGATGTACTTAGCTGAACACATCACTAAGCTAGCTGCAAtgacaaaatattcaaataaacagaaatatttaaccaaaataacaaataaattcttacacaaaacaaactaaaaagtaaacaattagaactaaaaaaagaagtaaCTAAACAAAACCCACCTACAGACCCAAACAAATAAACGCCAcaataaagcaaacacaactgaaagcaaacacaactgaaagcaaacacaactgaaagcaaacacaactgaaagcaaacagggCCTGCAGGCCAAGACACAAGACACAGGCCAAGGCCCTCTctttaaggaaaataaatgaataataaatcgcaaaaacaaataaaattagaaaacaaacaaactaaactaaacccaaaatacTAACGAAactataatctaacgaattgcaaaagatgaaaaataaaaacgtcaCACAAAAGtaggaaaacaataaataagtaaataataaagtaaataaactgcgTCTGGACGACGACACCAAATACAATAAATCAcccagaaacaaagaaataaacaaacaacaatgtaACGACTGGCAAAGCACCAGCTTAACCAGAACCAGCACAACGAAAGGAAGagcagctaaggttagctttCCGAGACTTTCCGTCTGCCTCACCCGCCCGCAATGAGCTTTCAAAATTTGCCCTGCGCTGCACTACTATGCATTGGGTCCAGCGGGTGCAGGTCTCTACTTTATACACAACGCACTCTGAGTTTAGTTAATCAGTTGTTTTAACTtacattatgtatatgtataaatatataaataacagccTTAAAATACGATGCAGTTTATAAATTTTtggcgattaaaaaaaaaacaaaaaaaactcgatattacaaaattacacatCGTCAAATCAACATTCACGATAATTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144730 True 1960 lncRNA 0.39 1 29696702 29698661

Neighbor

gene id symbol gene type direction distance location
LOC111193470 NA coding upstream 38280 29656537 ~ 29658422 (+)
LOC103025432 NA coding upstream 108580 29563196 ~ 29588122 (+)
donson LOC107555241 coding upstream 138659 29538337 ~ 29558043 (+)
LOC103025657 runx1,LOC108429862,LOC107571884 coding upstream 176868 29417222 ~ 29519834 (+)
LOC103024513 LOC107555266,LOC106574727,LOC106575573,LOC108429863,LOC107568777,LOC107709315,LOC107718016,LOC105889574,LOC100333907 coding upstream 455105 29208551 ~ 29241597 (+)
ncam2 ncam2,LOC107721821,LOC107698913,LOC107751079 coding downstream 145439 29844100 ~ 30451601 (+)
LOC111193471 NA coding downstream 841600 30540261 ~ 30547361 (+)
LOC111193577 LOC108429857,LOC108258902 coding downstream 963338 30661999 ~ 30668744 (+)
gart gart coding downstream 973491 30672152 ~ 30711252 (+)
adamts5 adamts5,LOC107751075,LOC107698897 coding downstream 1562619 31261280 ~ 31300421 (+)
G107094 NA non-coding upstream 12338 29684086 ~ 29684364 (+)
G107075 NA non-coding upstream 22368 29674096 ~ 29674334 (+)
G107074 NA non-coding upstream 40468 29655911 ~ 29656234 (+)
G107064 NA non-coding upstream 75190 29615278 ~ 29621512 (+)
G107057 NA non-coding upstream 96118 29597258 ~ 29600584 (+)
G107104 NA non-coding downstream 19511 29718172 ~ 29718407 (+)
G107106 NA non-coding downstream 21965 29720626 ~ 29720867 (+)
G107111 LOC108264080 non-coding downstream 54075 29752736 ~ 29753240 (+)
G107113 NA non-coding downstream 68870 29767531 ~ 29767994 (+)
G107121 NA non-coding downstream 109914 29808575 ~ 29808815 (+)
LOC111193573 NA other upstream 537022 29149065 ~ 29159680 (+)
LOC103027743 NA other upstream 972676 28703067 ~ 28724026 (+)
G106673 NA other upstream 1629719 28066352 ~ 28066983 (+)
G106661 lancl1 other upstream 1674655 28014516 ~ 28022047 (+)
LOC103037236 NA other upstream 3524901 26154417 ~ 26171801 (+)
G107117 NA other downstream 81665 29780326 ~ 29780927 (+)

Expression


Co-expression Network