G107181


Basic Information

Item Value
gene id G107181
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 30031953 ~ 30035249 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU144827
GTGGACCTGGATGTCCGAGGTGATAGAGGCTCACTAATCCATCTGatgggaaagtgtgtgtgtgtgtgtaggcctaTTAAAACTTTCCTGGCCTCATAACAGCTCCTTGAACTCAAGTTCAATACTCAcatcaaaccacacacacatatataaagacacacacacacacacacacacacaccttgaaCTGGACGCTTTGTGATCTAATAGACATACTTATCAATATAATGGACATCATGAACGGGCCAATACAGAGTAAACTAGTGAGAATGATGACTGACCCCAAAAACGTTATGGCaggtatacagtacaggccaaaagtttggacactccttctctttttcagtgcgttttctttattttcaagactgatatttacattgtagattctcactgaagcatcaaaactaggaatgaacacatgtggagttttatgtacttaacaaaaaaggtgaaataaccaaaaaaaaaaacatgttttatattctagtttcttcaaaatagccaccctttgctctgattactgctttgcacactcttggcatcattctctcaatgagcttcaagaggtggccacctgaaatgaaaagttttccaacagtcttgaaggaaggagttcccagaggtgtttattagcacttgttgcccctttgtcttcttcactctgtgctccagctcaccccaaaccctaaatctggattgggttcaggtccggtgactgtggaggttcagctcattttttgttaagtataaaactcca
>TU144828
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacatgttttatattctagtttcttcaaaatagccaccctttgctctgattactgctttgcacactcttggcatcattctctcaatgagcttcaagaggtggccacctgaaatgaaaagttttccaacagtcttgaaggaaggagttcccagaggtgtttattagcacttgttgcccctttgtcttcttcactctgtgctccagctcaccccaaaccctaaatctggattgggttcaggtccggtgactgtggaggttcagctcattttttgttaagtataaaactcca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144827 True 760 lncRNA 0.40 2 30034467 30035249
TU144828 False 318 lncRNA 0.39 2 30031953 30035249

Neighbor

gene id symbol gene type direction distance location
LOC111193470 NA coding upstream 373531 29656537 ~ 29658422 (+)
LOC103025432 NA coding upstream 443831 29563196 ~ 29588122 (+)
donson LOC107555241 coding upstream 473910 29538337 ~ 29558043 (+)
LOC103025657 runx1,LOC108429862,LOC107571884 coding upstream 512119 29417222 ~ 29519834 (+)
LOC103024513 LOC107555266,LOC106574727,LOC106575573,LOC108429863,LOC107568777,LOC107709315,LOC107718016,LOC105889574,LOC100333907 coding upstream 790356 29208551 ~ 29241597 (+)
LOC111193471 NA coding downstream 505012 30540261 ~ 30547361 (+)
LOC111193577 LOC108429857,LOC108258902 coding downstream 626750 30661999 ~ 30668744 (+)
gart gart coding downstream 636903 30672152 ~ 30711252 (+)
adamts5 adamts5,LOC107751075,LOC107698897 coding downstream 1226031 31261280 ~ 31300421 (+)
adamts1 adamts1,LOC107698918,LOC107751074 coding downstream 1277491 31312740 ~ 31319149 (+)
G107178 NA non-coding upstream 8309 30022901 ~ 30023644 (+)
G107127 NA non-coding upstream 199985 29831737 ~ 29831968 (+)
G107121 NA non-coding upstream 223138 29808575 ~ 29808815 (+)
G107113 NA non-coding upstream 263959 29767531 ~ 29767994 (+)
G107111 LOC108264080 non-coding upstream 278713 29752736 ~ 29753240 (+)
G107207 NA non-coding downstream 58918 30094167 ~ 30097747 (+)
G107243 NA non-coding downstream 132069 30167318 ~ 30168124 (+)
G107250 NA non-coding downstream 163046 30198295 ~ 30198944 (+)
G107261 NA non-coding downstream 366377 30401626 ~ 30464931 (+)
G107128 NA non-coding downstream 413078 30448327 ~ 30455770 (+)
G107117 NA other upstream 251026 29780326 ~ 29780927 (+)
LOC111193573 NA other upstream 872273 29149065 ~ 29159680 (+)
LOC103027743 NA other upstream 1307927 28703067 ~ 28724026 (+)
G106673 NA other upstream 1964970 28066352 ~ 28066983 (+)
G106661 lancl1 other upstream 2009906 28014516 ~ 28022047 (+)

Expression


Co-expression Network