G107342


Basic Information

Item Value
gene id G107342
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 30715180 ~ 30716606 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU145013
ttacagagtctgtggcccatgacttcaaatatatttctccttctcgcccccaacaaaaaaaaaaagtttggacacccctgatttaaaagtacaaaactggagatatgacactttgatacagtgtagtagtcagtgtacagctatAGTAAAACCATTAATGTCCAAACCACTAGCAACGAAAGTGAGTACACCaagtgaaaatggccaaattgtgcccaaaatGTAAGTACATTGTTTtgccaccattattttccagcagtGCTTTAACTCTGTTGGGGATGGAGTTCACTATAGCTTCACAGGTCGCCACTGGACTCTGCACTCCTCCACCTTCGGTTtcaggatgccccacagatgctcaataggcTTAATGTCTGGAGCCATACTTGGCCAGTCAATTACCTTTATCTTCAGCTTCTTCAGCAAAGCAGCTGCAAATGTAGGGCTCAACTTTTTCTGTCAACCCTAGGCAGTTTAGGGCATTATCCATGTTCAGACTAAGCCATCTTTGTAGAGAACAATTCTGTTTCTcccatcctcagagagttctttgccatgaagtgCTATGTTAaatatccagtggccagtatgagagaattggacccaaaacaccaaatttaactGCTCCCCTTTCACACATGAGACCTTCTAAAAACTAATGAGTCACATGATACACCAGGGAAGGAAAATGGCTAATTGGGCACAATCTGGCCATTTGTATTTAAGGATGTACTCACTTTTAATGTCAGTAGTTTAGACagtaatggctgtatattgaggtATTTTGAGCTGTATACTATCAAAGTGTCTTATTTTCAGTCTTACCCCGTGAAAAgatataacaaaatatttacacaatcttAAAAGTTAATACaaattattaacatatttaattgtTAATAACTGTTAAGAATCTAAATATCCAaggtgtgaagaaaaaaaattataaaaactgaaaaaataaaataaaatctataacCAGTGACTTTCACTTTTTCTAGAAACTTTCTATAAAATATCTCCTTTCAACAACAAGCTCAGTATTTAGTGTGATTAACTGCTTTATCATAACGTTTCTTAACCTCATCAGAAGGTGTAACGACGTACGGGGGGTTGAAGAGCAGAACATCCACCTTTCCATTCAGTCTGGGTAACAAACACTCCATCTAACAAACAAACCcattattaaatacaatatacatatatatattgtacataaaacATTATGAACATTCAGAAACAGAtctgcttcagaaaaaaaaaaatcagactttAAGGCgaattaagtgacactagtaaggatgccaaCATTAAAGTGAGCAAGAGTGTTACCATGTCTCCATTCTAATGGGAAATCTGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU145013 True 1361 lncRNA 0.37 2 30715180 30716606

Neighbor

gene id symbol gene type direction distance location
gart gart coding upstream 3928 30672152 ~ 30711252 (+)
LOC111193577 LOC108429857,LOC108258902 coding upstream 46436 30661999 ~ 30668744 (+)
LOC111193471 NA coding upstream 167819 30540261 ~ 30547361 (+)
ncam2 ncam2,LOC107721821,LOC107698913,LOC107751079 coding upstream 263579 29844100 ~ 30451601 (+)
LOC111193470 NA coding upstream 1056758 29656537 ~ 29658422 (+)
adamts5 adamts5,LOC107751075,LOC107698897 coding downstream 544674 31261280 ~ 31300421 (+)
adamts1 adamts1,LOC107698918,LOC107751074 coding downstream 596134 31312740 ~ 31319149 (+)
cyyr1 cyyr1,LOC107751099 coding downstream 609088 31325694 ~ 31341351 (+)
app app,appa,LOC108258852,LOC107593741,LOC107698920 coding downstream 630695 31347301 ~ 31402273 (+)
G107267 NA non-coding upstream 186696 30493001 ~ 30528484 (+)
G107261 NA non-coding upstream 250249 30401626 ~ 30464931 (+)
G107128 NA non-coding upstream 259410 30448327 ~ 30455770 (+)
G107250 NA non-coding upstream 516236 30198295 ~ 30198944 (+)
G107243 NA non-coding upstream 547056 30167318 ~ 30168124 (+)
G107389 NA non-coding downstream 16062 30732668 ~ 30732900 (+)
G107394 NA non-coding downstream 27071 30743677 ~ 30744047 (+)
G107396 NA non-coding downstream 28825 30745431 ~ 30745631 (+)
G107397 NA non-coding downstream 44064 30760670 ~ 30790277 (+)
G107399 NA non-coding downstream 45099 30761705 ~ 30802847 (+)
G107117 NA other upstream 934253 29780326 ~ 29780927 (+)
LOC111193573 NA other upstream 1555500 29149065 ~ 29159680 (+)
LOC103027743 NA other upstream 1991154 28703067 ~ 28724026 (+)
G106673 NA other upstream 2648197 28066352 ~ 28066983 (+)
G106661 lancl1 other upstream 2693133 28014516 ~ 28022047 (+)

Expression


Co-expression Network