G53415


Basic Information

Item Value
gene id G53415
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5013895 ~ 5017158 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU60832
TGTGCTCCATGAAAAAGGCATATGGGTTGGAATACATGTTTTATGTTAGAACAACATATAAACAACGAACAGAATTTTCAATTTTGGGTGAGCTATCCCTTTAAATATTAAGCATTAACTTTAATCAGTTGTCAAACTCACTTTCTTGACCCAACAACATCGCCGCCTTCATTCAAAAAGCAATGTCACCCCTACCTCCCGACTGCTGTCTGACAATTAAAGCCTGGTGGTTTGTCAGGCATCCCAGTGTTTGCCCAACTGCTCAGCATACCTCACACCACAAACCGTTAATTGACCTGCGGAGACAGCCTCTTATGATTCACCCGTCTAGGATAACTCCACCATAACGGCGAACGAGGACTTGAGGCTATTATATCCTCCTCCGGAATCGCATCAATTAGAATGTGCAGCCATCACCCCTGCAGCTCAATTTTAATACATCCATTTTTCTAAAGCATGGACTTGACCCAAAGGGATGCGCTCTGCGGCGGAGAGCTGGTGGTGTATAATAACTCATGTTAACGCATTTGCTGCATGATTCGTGGCACAAGGAAGGCGCTGGACCCCGTAACTCACAGGGGCCCATTAACGAGAGATCACTCGCCAAATGACCACTAATAGGACCATGCTGCTGCGGAGACTTAGTGGGGCATCTGTTGCTTCTTTCTGCAACCTGTCCCAAATGAACAGCCAATATGAGAAAAAAAGCTAACACGTAAAAGTGCCAAAACAACCGGCGGGGTGTGCATTCTTTAATCAGCTTTATAAATCCCCATTCGGCTCATGACTCATTTGAATAACGCCCACAACTAAGGCAGCTCACAGGTCTTCATTGATGTTTTAACCCACTTTGTCCCTCCCTATCTTAATGGCAATGCTTGTACCAACCCCAAAACCAATGTGACAATTAATTAAATGCAGAGTTTGCCTAATTAAAAGGTTTTCAAAATGCAAAACCTGACTGGATGTGCTGATTAGAGCCCTCCTGCAAACATTTAGTCATCAGGGACAGACAAATCTCTCGCTTTTTGCAGACAACAGTTTGTTCTTTCTCTCTTCTCTAAGCCAGTGTCTTAATCAGTCTGTGCGACATGACCATTTCATTAGCATTTTCACCCACTGTTCATAACAAAAGCTGATTTTAATAAATTAGCAGGAAGAGAATAAATTAGCTTTGGGATCAGGGAGGATCCAAAACACCCTGAAAAAAAAAAAAAAAAAAAAACGTCTCCTAACAGAAACAGAATAAATGTCGTTCCAGCAGGAGTGTAGGAACGATCTGAAAAGCATGACACAATTTTGACACTGGTTTATATGCCTAGTTGCCAGGGATACTGTCATATGAGACCATTTAAAAGCTAAATAAAACCTTAGAAAGTTTCTAGAAATGTCAGCATTCTAGCATTTTTGTCATGAAACTTTAATAATTAGGCCTAAAACATTGTTGTGACAAGTATAAATATATAAAAATGCATATTTTTGTGAAAATAAACAACTTTTTCCTGTTGTTCATATCTTCTTTCCGCAGGAAGTTATTTTTTCTGTCAGTGGCTCAGCACACAAACTGTGCCAGGCGTGGGTTATATTCATGAATATGAATTATTTTATGTGACGTTTGCCCTAATTGATTCACTGAAAAGTGGAAGTTGGTAGCCATTGTATGATTACCACCTGCCGTTCAGCCCACTCCTAATCCAAACAAGCAATCCAGGGCGGGTCTTAAAAGTTATCATTTTACTAGCTGTCAACATTTTTTCCCCCTTCACATCACTGTTAAGCAAAATAAACCATAAAAAAATCCCGAAAAAGTGTGGAAGACTAATTTTGTTATTTCTAACAGTAGGAGGACAGTTTAGGCATGTACAAATCTACATATCAGATCCTTGCTGGTGAATTTTAATGCCGTCTGAGCATGTTGAATTGGAGGTGGAGCCTGCCATGGATCTGTTACAAAAGCGATGCTTCGATGGCTGTAACCACGGTGCTTTAAAGGAGATGGATTTAGAGAGTTTTAGCATGATGACAGTCCCAACAGATACAACATGCTGTCAGCATGCTAAATTGCTCTCTAAGAAGTTAAAGAAATCTCTAAATCCAACACCTTAAAAAAAAACTCTTCAACCTCACTAAACTGAGTCAGTAAAACTGGATTCTTGCAGATATGTGACTAATGTTTAAGGGTCTGCTACTTCTGTTTTCCATGTCACGGGACAATATATTACATACAGTAAATGCTATCAAGTTTGAATACATGACAACAACACAATTTCTCAGGCATTACTCACCTTGCCATGGCCACACCAAACACACAGCCACCAACTAGGGACCAGAACCCGATCCAGCCAGCGTCCACCTGTAAGAACAGAGAAATGTGTGATCAGAGGGGATTATTCGCTGCTTGTGATGCTGGACATCACTCGTGATGGAGCAGCCTGATGGGTAGTGAGCTAGGAGCGCCTGCAGTCTGAGCAACTGTGTCTATCAGAGAGAAGAATAAACTGGCAGACTTCATGCTGTCCACGAACATGTCTTTGATGAGCAATCTGGTTCAACAGCAGACTTCATCAAACAGATGGTCTGTATCAGGCATGACTGAGGTTATCCACAGTATTGATAAGAGCAGGGATACAAAACAAGTTACTCCATGAGGACTAAATAAAATGTTATATACTGTTTGTCAAAGCAAAGGTGGAAACCCCCCCCCAAAAAACAGATATGCTAACAAATGTTTGGGGTCGGTAAAGTCTCTTATGCTCACCAAGGCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60832 True 2767 lncRNA 0.41 2 5013895 5017158

Neighbor

gene id symbol gene type direction distance location
CI01000009_04976520_04987680 NA coding downstream 26188 4976486 ~ 4987707 (-)
CI01000009_04888729_04895882 NA coding downstream 117416 4888197 ~ 4896479 (-)
CI01000009_04778332_04780190 NA coding downstream 227679 4778053 ~ 4786216 (-)
CI01000009_04738315_04741396 RALB.S, RALBA, RALB.L, RALB coding downstream 271469 4738229 ~ 4742426 (-)
CI01000009_04196309_04197268 DNAJC28 coding downstream 816627 4196309 ~ 4197268 (-)
CI01000009_05046374_05094978 SEMA5B, SEMA5BA coding upstream 29142 5046300 ~ 5095973 (-)
CI01000009_05110455_05136845 NA coding upstream 93047 5110205 ~ 5138314 (-)
CI01000009_05190789_05192684 NA coding upstream 173336 5190494 ~ 5192890 (-)
CI01000009_05278137_05361256 ADCY5 coding upstream 259979 5277137 ~ 5361478 (-)
CI01000009_05362086_05363378 NA coding upstream 344884 5362042 ~ 5364081 (-)
G53173 NA non-coding downstream 166792 4846901 ~ 4847103 (-)
G53167 NA non-coding downstream 175124 4838462 ~ 4838771 (-)
G53133 NA non-coding downstream 183128 4820723 ~ 4830767 (-)
G53132 NA non-coding downstream 204126 4804438 ~ 4809769 (-)
G53131 NA non-coding downstream 240165 4771212 ~ 4773730 (-)
G53476 NA non-coding upstream 223266 5240424 ~ 5241350 (-)
G53425 NA non-coding upstream 233132 5250290 ~ 5251759 (-)
CI01000009_05367161_05370504 PTPLB, HACD2, DKFZP459B2333 non-coding upstream 348608 5365766 ~ 5370504 (-)
G53487 NA non-coding upstream 352422 5369580 ~ 5369781 (-)
G53490 NA non-coding upstream 357112 5374270 ~ 5374719 (-)
G52828 NA other downstream 782426 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 1751938 3261038 ~ 3262843 (-)
CI01000009_02885473_02893975 NA other downstream 2114488 2883688 ~ 2893975 (-)
G52410 NA other downstream 2451362 2551724 ~ 2562533 (-)
G53515 NA other upstream 485237 5502395 ~ 5505248 (-)
G55814 NA other upstream 3408663 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 3840994 8856310 ~ 8860563 (-)
G59097 NA other upstream 7271059 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 8958230 13975099 ~ 13978614 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G71293 NA non-coding NC_056707.1 CM032076.1 18222314 ~ 18226787 (-)