gemin8 (gemin8)


Basic Information

Item Value
gene id gemin8
gene name gemin8
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 17998315 ~ 18006511 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228686.3
ATTGTAAAGTGGAGATTCTCCCTAGTAGAGAGTCTGTGGCAACAAACACACATGGCCGTGTTTGTGTTTCACTAGAGAAATGCTGCTGAGAAAAAGAATATCTCTGCGCTTTAACTGATTTACTTCTGATACAAGAACACTGACATCATGTATAGCCAGTGTGACACTGATGCTTGGTACAGCCACCCTGTCTATGCCCGCTACTGGCTGCATTACCAGCAGGCCATGACCTGGCATCAGAGGCACAGGCAGGCTTACAGCAAGGCCGTGCAGGCTGCTTATGGACCCGCACTGTATCATATGTTCCCCACTACCTCGCCCCGCTACACAGACTGGCATAGTGAAGAAAGGAAGGATCGAACCCGTGGACGAATGAAGAGGCGTGGCAGAGGATACGCAGTGGAAGGTGAGGAAGAAGACGAAGAAGTCCCAGAGAGCACAGAAGAGTCTGAGAGTTCGGAAGAAAGCGAGATCGAATGCAACGTCAGCAAAATGGAGATCTCAGCAGAACTACGGCAGTTCTTTGCACAGACGGAGCAGCACAGGGAGGAgctgaAAAAGCAACAGCAGATGGAGGCAGAGCGGCAGGAAGATTACGTGTTGGCCGACCAGGACCTGCACAGGGTTTCCTGGCGTAGCGCTCAGGCCCCTGTTGAACGGCCGGGCGAGAGAAGGAGTGCAGAGATGAAGAAGCTCTACGGCAAAGACGCGGCCAAGATCCAGGGCATGGAGACGGCAATGCAGCTCACTTTCGATCGGAACTGCGACCGCAAACAGCCCAAGTACTGGCCAGTTATACCGTTAAACCTGTAGCACCTCAATGCTACAGCCATTTAACCTCTCTAGTTTCAGAGTTAAAGGAATACAAGCAACAGTGCCTGCCCATTGGATTATGTCCGTTATGCCAATGTGTGATTTATTTGTCATACATACTTTGGGCACCAATATCACCAATATAAAAGTTTCTGTAACTGTGAATAGCTAAgcaattaaaagtttaaagcagCAACATtactttaatgtttaaatattaaacaagagAAAAGGGCTTGAAACTAAATTTTGGCAAATATCACACCCATccaaacagattgtattgtCTATATAATCACTTGCCCTAAAGTCATAGAATAACAGTACActatgtaaactgatcatgtCAGAGCgtagcttgggaatgcccacacctgtttaAGTTACGAGGTGCTATCTTGCATGTGTGAGGTTGATCTCTGGACAGCATACTCATGGCAAGGTGCCCCTGCCTCTTCATGTATTtaattgaaaacaagatggcaggaatcccagtcaaaagtttctactgCCAGTAGTGGCCAGCATAGTGTTtgttaatgattgtgactgtcaGCTTCTGGCTGCAGTAGTCCTTTCGAACGGACAAGTGACTGTGGCAAAAATAGTATCCACATTCATTGCAGGAGGCCTcagaaaaatactgtatctcgCAGGTCAGTACAGGGTTTTTTCGcctttaataagtcatggcaaaagtcacgggacacgaTACTAGTTCTTAACGCATGTCTTCTGGCATGTCCATGTATCTCAGTCATTGTCCATGTTAATTTGAATGTATGTTACAGGTGCATCAGAAAGCGACTAgattaaataatgcttattaATTCTTTTTGCTGTTGTGTTCCCTTAAAACTTCACATAGATGTCATTTCAGGGCCGTATCATGACTTTAACTTTCTAGTCCTTTTCCTTTTCACTAATGGAACACATCTGTCCTGCTGCCGCTCTAATTTCACACGTTGCTGTTCATCACTCTCCGATTTTCCCCTTCTCCAAGTCCATGAATGATGCAGATGCCGCATGCATCGCAGCATAACTCTTTTTCACAGAACTCATTCGCACTAACTAGGTCAGTGCCTCCCCCATGTTTTCAGCCCAGCGCAGTTCGTCTGCATCCTCTGTCCTCCGCGTTTCCTCTGCTCTAAAGAGAGAGTTTGGAGTGTGTTGCACTTTCtggtgttttccttttttttgtgacTGTTCTTTTTTATAGGTTTTCTATGTgaatatatttcaaataaaatgcaaaaggattaaattaaatta
>XM_007228687.3
ATTGTAAAGTGGAGATTCTCCCTAGTAGAGAGTCTGTGGCAACAAACACACATGGCCGTGTTTGTGTTTCACTAGAGAAATGCTGCTGAGAAAAAGAATATCTCTGCGCTTTAACTGATTTACTTCTGATACAAGAACACTGACATCATGTATAGCCAGTGTGACACTGATGCTTGGTACAGCCACCCTGTCTATGCCCGCTACTGGCTGCATTACCAGCAGGCCATGACCTGGCATCAGAGGCACAGGCAGGCTTACAGCAAGGCCGTGCAGGCTGCTTATGGACCCGCACTGTATCATATGTTCCCCACTACCTCGCCCCGCTACACAGACTGGCATAGTGAAGAAAGGAAGGATCGAACCCGTGGACGAATGAAGAGGCGTGGCAGAGGATACGCAGTGGAAGCAGAAGACGAAGAAGTCCCAGAGAGCACAGAAGAGTCTGAGAGTTCGGAAGAAAGCGAGATCGAATGCAACGTCAGCAAAATGGAGATCTCAGCAGAACTACGGCAGTTCTTTGCACAGACGGAGCAGCACAGGGAGGAgctgaAAAAGCAACAGCAGATGGAGGCAGAGCGGCAGGAAGATTACGTGTTGGCCGACCAGGACCTGCACAGGGTTTCCTGGCGTAGCGCTCAGGCCCCTGTTGAACGGCCGGGCGAGAGAAGGAGTGCAGAGATGAAGAAGCTCTACGGCAAAGACGCGGCCAAGATCCAGGGCATGGAGACGGCAATGCAGCTCACTTTCGATCGGAACTGCGACCGCAAACAGCCCAAGTACTGGCCAGTTATACCGTTAAACCTGTAGCACCTCAATGCTACAGCCATTTAACCTCTCTAGTTTCAGAGTTAAAGGAATACAAGCAACAGTGCCTGCCCATTGGATTATGTCCGTTATGCCAATGTGTGATTTATTTGTCATACATACTTTGGGCACCAATATCACCAATATAAAAGTTTCTGTAACTGTGAATAGCTAAgcaattaaaagtttaaagcagCAACATtactttaatgtttaaatattaaacaagagAAAAGGGCTTGAAACTAAATTTTGGCAAATATCACACCCATccaaacagattgtattgtCTATATAATCACTTGCCCTAAAGTCATAGAATAACAGTACActatgtaaactgatcatgtCAGAGCgtagcttgggaatgcccacacctgtttaAGTTACGAGGTGCTATCTTGCATGTGTGAGGTTGATCTCTGGACAGCATACTCATGGCAAGGTGCCCCTGCCTCTTCATGTATTtaattgaaaacaagatggcaggaatcccagtcaaaagtttctactgCCAGTAGTGGCCAGCATAGTGTTtgttaatgattgtgactgtcaGCTTCTGGCTGCAGTAGTCCTTTCGAACGGACAAGTGACTGTGGCAAAAATAGTATCCACATTCATTGCAGGAGGCCTcagaaaaatactgtatctcgCAGGTCAGTACAGGGTTTTTTCGcctttaataagtcatggcaaaagtcacgggacacgaTACTAGTTCTTAACGCATGTCTTCTGGCATGTCCATGTATCTCAGTCATTGTCCATGTTAATTTGAATGTATGTTACAGGTGCATCAGAAAGCGACTAgattaaataatgcttattaATTCTTTTTGCTGTTGTGTTCCCTTAAAACTTCACATAGATGTCATTTCAGGGCCGTATCATGACTTTAACTTTCTAGTCCTTTTCCTTTTCACTAATGGAACACATCTGTCCTGCTGCCGCTCTAATTTCACACGTTGCTGTTCATCACTCTCCGATTTTCCCCTTCTCCAAGTCCATGAATGATGCAGATGCCGCATGCATCGCAGCATAACTCTTTTTCACAGAACTCATTCGCACTAACTAGGTCAGTGCCTCCCCCATGTTTTCAGCCCAGCGCAGTTCGTCTGCATCCTCTGTCCTCCGCGTTTCCTCTGCTCTAAAGAGAGAGTTTGGAGTGTGTTGCACTTTCtggtgttttccttttttttgtgacTGTTCTTTTTTATAGGTTTTCTATGTgaatatatttcaaataaaatgcaaaaggattaaattaaatta
>XM_007228688.3
ATTGTAAAGTGGAGATTCTCCCTAGTAGAGAGTCTGTGGCAACAAACACACATGGCCGTGTTTGTGTTTCACTAGAGAAATGCTGCTGAGAAAAAGAATATCTCTGCGCTTTAACTGATTTACTTCTGATACAAGAACACTGACATCATGTATAGCCAGTGTGACACTGATGCTTGGTACAGCCACCCTGTCTATGCCCGCTACTGGCTGCATTACCAGCAGGCCATGACCTGGCATCAGAGGCACAGGCAGGCTTACAGCAAGGCCGTGCAGGCTGCTTATGGACCCGCACTGTATCATATGTTCCCCACTACCTCGCCCCGCTACACAGACTGGCATAGTGAAGAAAGGAAGGATCGAACCCGTGGACGAATGAAGAGGCGTGGCAGAGGATACGCAGTGGAAGAAGACGAAGAAGTCCCAGAGAGCACAGAAGAGTCTGAGAGTTCGGAAGAAAGCGAGATCGAATGCAACGTCAGCAAAATGGAGATCTCAGCAGAACTACGGCAGTTCTTTGCACAGACGGAGCAGCACAGGGAGGAgctgaAAAAGCAACAGCAGATGGAGGCAGAGCGGCAGGAAGATTACGTGTTGGCCGACCAGGACCTGCACAGGGTTTCCTGGCGTAGCGCTCAGGCCCCTGTTGAACGGCCGGGCGAGAGAAGGAGTGCAGAGATGAAGAAGCTCTACGGCAAAGACGCGGCCAAGATCCAGGGCATGGAGACGGCAATGCAGCTCACTTTCGATCGGAACTGCGACCGCAAACAGCCCAAGTACTGGCCAGTTATACCGTTAAACCTGTAGCACCTCAATGCTACAGCCATTTAACCTCTCTAGTTTCAGAGTTAAAGGAATACAAGCAACAGTGCCTGCCCATTGGATTATGTCCGTTATGCCAATGTGTGATTTATTTGTCATACATACTTTGGGCACCAATATCACCAATATAAAAGTTTCTGTAACTGTGAATAGCTAAgcaattaaaagtttaaagcagCAACATtactttaatgtttaaatattaaacaagagAAAAGGGCTTGAAACTAAATTTTGGCAAATATCACACCCATccaaacagattgtattgtCTATATAATCACTTGCCCTAAAGTCATAGAATAACAGTACActatgtaaactgatcatgtCAGAGCgtagcttgggaatgcccacacctgtttaAGTTACGAGGTGCTATCTTGCATGTGTGAGGTTGATCTCTGGACAGCATACTCATGGCAAGGTGCCCCTGCCTCTTCATGTATTtaattgaaaacaagatggcaggaatcccagtcaaaagtttctactgCCAGTAGTGGCCAGCATAGTGTTtgttaatgattgtgactgtcaGCTTCTGGCTGCAGTAGTCCTTTCGAACGGACAAGTGACTGTGGCAAAAATAGTATCCACATTCATTGCAGGAGGCCTcagaaaaatactgtatctcgCAGGTCAGTACAGGGTTTTTTCGcctttaataagtcatggcaaaagtcacgggacacgaTACTAGTTCTTAACGCATGTCTTCTGGCATGTCCATGTATCTCAGTCATTGTCCATGTTAATTTGAATGTATGTTACAGGTGCATCAGAAAGCGACTAgattaaataatgcttattaATTCTTTTTGCTGTTGTGTTCCCTTAAAACTTCACATAGATGTCATTTCAGGGCCGTATCATGACTTTAACTTTCTAGTCCTTTTCCTTTTCACTAATGGAACACATCTGTCCTGCTGCCGCTCTAATTTCACACGTTGCTGTTCATCACTCTCCGATTTTCCCCTTCTCCAAGTCCATGAATGATGCAGATGCCGCATGCATCGCAGCATAACTCTTTTTCACAGAACTCATTCGCACTAACTAGGTCAGTGCCTCCCCCATGTTTTCAGCCCAGCGCAGTTCGTCTGCATCCTCTGTCCTCCGCGTTTCCTCTGCTCTAAAGAGAGAGTTTGGAGTGTGTTGCACTTTCtggtgttttccttttttttgtgacTGTTCTTTTTTATAGGTTTTCTATGTgaatatatttcaaataaaatgcaaaaggattaaattaaatta

Function

symbol description
gemin8 Predicted to be involved in spliceosomal snRNP assembly. Predicted to be part of SMN complex. Orthologous to human GEMIN8 (gem nuclear organelle associated protein 8).

NR:

description
PREDICTED: gem-associated protein 8 isoform X1

GO: NA

KEGG:

id description
K13136 GEMIN8; gem associated protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228686.3 True 2085 mRNA 0.45 4 17998315 18006511
XM_007228687.3 False 2079 mRNA 0.45 4 17998315 18006511
XM_007228688.3 False 2076 mRNA 0.45 4 17998315 18006511

Neighbor

gene id symbol gene type direction distance location
LOC103027494 NA coding upstream 35597 17950021 ~ 17962718 (+)
hsf2bp LOC106595116 coding upstream 53590 17934859 ~ 17944725 (+)
ing1 ing1 coding upstream 101878 17892761 ~ 17896437 (+)
LOC103032976 si:dkey-1h24.2,LOC108434752,LOC108258345,LOC107707829,LOC560392 coding upstream 524918 17424943 ~ 17473397 (+)
LOC103030825 NA coding upstream 672949 17322245 ~ 17325366 (+)
LOC103032361 gpm6ba,LOC108434682,LOC108259029,LOC107552377,LOC107588840,LOC107654257,LOC107667658 coding downstream 2791 18009302 ~ 18082462 (+)
LOC103032036 LOC108258971,LOC108434686,LOC107588835,LOC107667659,LOC107742634,LOC107739811,LOC107700106,LOC107552381 coding downstream 186187 18192698 ~ 18214872 (+)
LOC111193482 NA coding downstream 329634 18336145 ~ 18337262 (+)
arhgap6 arhgap6 coding downstream 397995 18404506 ~ 18566714 (+)
mid1 mid1,LOC103030906,LOC106575281,LOC106574413 coding downstream 636197 18642708 ~ 18742642 (+)
G104383 NA non-coding upstream 5866 17924950 ~ 17992449 (+)
G104392 NA non-coding upstream 6168 17970934 ~ 17992147 (+)
G104396 cbs,LOC107715910,LOC106593678,LOC107557921,LOC106562750 non-coding upstream 15511 17977296 ~ 17982804 (+)
G104374 ube2a,ube2al,LOC107702882,LOC103029486,LOC107552373,LOC108266561,LOC103021436,LOC108259060,LOC107588833,LOC105934920 non-coding upstream 32840 17896669 ~ 17965475 (+)
G104378 NA non-coding upstream 92316 17903955 ~ 17905999 (+)
G104445 NA non-coding downstream 87532 18094043 ~ 18095156 (+)
G104448 NA non-coding downstream 164035 18170546 ~ 18170758 (+)
G104446 NA non-coding downstream 182199 18188710 ~ 18191210 (+)
G104474 NA non-coding downstream 208585 18215096 ~ 18215471 (+)
G104478 NA non-coding downstream 209095 18215606 ~ 18216090 (+)
LOC111193547 NA other upstream 579177 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 859342 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 1103723 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 1423882 16555694 ~ 16574433 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other upstream 1490528 16463938 ~ 16507787 (+)
G104656 pcdh8 other downstream 912549 18919060 ~ 18923203 (+)
nfkbiz nfkbiz other downstream 1727715 19734226 ~ 19744924 (+)
G105276 NA other downstream 2982762 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 3012527 21019038 ~ 21028990 (+)
G105357 NA other downstream 3320681 21327192 ~ 21369204 (+)

Expression


Co-expression Network