hsf2bp (LOC106595116)


Basic Information

Item Value
gene id hsf2bp
gene name LOC106595116
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 17934859 ~ 17944725 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228693.3
AGCCACCATTAACCACAAGTCTACAGATAAGCTTtatattttctctgtatttaaTTATAAAGTTGTTCAGCTCTTTATAAAACCAGCAGAAAGCTAAGAAAAAGTTCCAGCAGAGGGAGCCACAGACCTCTATAGTCTTCCTCCTCAGCTTCAGTCTCTCAGAGGCGCTCAGTTTATAAATTTAACAGTTTTTCTCTTCAGGTTATGTGTGTCGCTTGCCCACTGCTAGCTCTATAACTCctctagctagcgttagctttccTACGCTAGGCTAGTTTGCTTATCTTGCTAGTTGAGTTGTATGGTTAAATAACGTTATATTTGTAGCTGAATATGAACGCAGTAGAGTCGATTAAATCTTCGCCTTTGAGCTCCACAAGAGAGGATGCAGTAGGCGACTGTTTTGTCAGCGTGAGAAAACGGGACTTGGAAAGACTGTCCACAGAGGTCATGCAACTCAGAGAGTTCCTGCCCAAAGTTATTAACAGTGACATCATGGTCGCCCTGCATAAAGCACAGATCCTAGACAAAAAACTAAAGGAACAGGGTCTGCAGGagcagaagaagcagcagcTGATGCAGGAGTGCCTACACCTCCGCTCACGCCTGGAGGCCCTGCAAGCAGAGTGCCAGAAAGACAAAGAgGAGAAGATAGTTTTGAGGGAGCAGCTGTGggagagcagagagcagctgcagcagcaggcTGAGTTCTGTACAGGCCTGGGCGCCGCTACATGCACTCTGCTGTGGAGCGCCTCCAGCAAGGAGGAGGCCGTCAGGGACATACTGGCTGATggtaAGCTGGAGCCATTCCTGAGTGTAGCAGGTCAAACCCTGGAAAGCTTTGTCAAATCTCTGGATGAAGAGGAGAAACCCCAACAGCAGCACTACAATTCTCACGAGCACCAGTTTGTGCTAGCGCTTGCAGGTGTCATCACTAATATAGCTGCTGTGACGAGTGGAAGGGACTTTATCTCCAACTCCGCCCACATATTGTTGGACACTCTGATGCAGCTACTTGGGCTCATGAAACCAGGGGTGTTTGCAAAACTCAAAGTGTTGATGCTGATGGCTTTGTATAACGTCAGCATCAGTGTGAAGGGGCTGACATACATCAGCGAGAGTCCCGCACTCATACCGCTTATACACACCCTACTTAAAgACCAGGACTCAGAAGTGTGCCTGCAGGCTTTGCGGCTGCTCCAGTCTTTGCTGGTGGAGAGTGAAGTGGTGGTTCAGTTTACCCCTGACCTGCTGCGCTCTCTACCAACGGGACGCATCCGCCAGCTGACCTCCAGCCGCCATACCGTGCTCAGCCAAACAGCCAAGGAGGCCCTGGAGGACCTGGAGCGGCTCACCAGCACCCAGAAATCAGCCACTGAGAAAAAACAGTCAAGTATCTGACATCTGTGGACTACCAGGATTACTTTTCTCAGTGGGGGACTGTTTTAGCTTTTCTCTTGTTCATCAGTGGTAATGGTGTAATTAGTTAAGAGTGGTCAGAGGTCATAGGGTCAGCTGAAATATGGCCAAACTGGTTCTCTGGGTCGTAATATTGGTAAGAGTGGTTGATGTTACCGTGTTTTAGGAGAATATTGCTTGTACACTGGTTAAGGATAGTGTTCCAAGAATTTGAAGACTATTAGTTGTTCTTATACACTACAAGAATAGTTGAGATTCTTTTTATCTGCACATTGATTACCACAAATAATTACTGTGAAATATTTCCCTGTACTTACATAAAAACACTAACTTACTAAGAATTGAAGCGAATGGGCAAATTCttgagcatttttatttttgagccATTTACTTTTGTTTGCTTCTAAGTACAGGAAAATCTTTTTCCAGATAAACTACATATATAAAAGATaaagttataataaaaaatgttaaagatgGCTGTGATTGTACCTAATCTCATGTCTCAGTTACATGTTCCTCTTTCTGTTCATACTGTTcctattgttttgtattttgtctgtcattaaaactattttataatCATATAAAATCTGCAAACCGGCCAAACTGTGACAGAAGATAAAAGGACCTTTGAGTTCA

Function

NR:

description
heat shock factor 2-binding protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228693.3 True 2064 mRNA 0.44 8 17934859 17944725

Neighbor

gene id symbol gene type direction distance location
ing1 ing1 coding upstream 38422 17892761 ~ 17896437 (+)
LOC103032976 si:dkey-1h24.2,LOC108434752,LOC108258345,LOC107707829,LOC560392 coding upstream 461462 17424943 ~ 17473397 (+)
LOC103030825 NA coding upstream 609493 17322245 ~ 17325366 (+)
map4k4 map4k4,LOC108258915,LOC106574534,LOC106575325,LOC107668172,LOC107588849,LOC107707082 coding upstream 617656 17213834 ~ 17317203 (+)
lonrf2 lonrf2 coding upstream 735244 17183013 ~ 17199615 (+)
LOC103027494 NA coding downstream 5296 17950021 ~ 17962718 (+)
gemin8 gemin8 coding downstream 53590 17998315 ~ 18006511 (+)
LOC103032361 gpm6ba,LOC108434682,LOC108259029,LOC107552377,LOC107588840,LOC107654257,LOC107667658 coding downstream 64577 18009302 ~ 18082462 (+)
LOC103032036 LOC108258971,LOC108434686,LOC107588835,LOC107667659,LOC107742634,LOC107739811,LOC107700106,LOC107552381 coding downstream 247973 18192698 ~ 18214872 (+)
LOC111193482 NA coding downstream 391420 18336145 ~ 18337262 (+)
G104378 NA non-coding upstream 28860 17903955 ~ 17905999 (+)
G104363 NA non-coding upstream 72999 17861635 ~ 17861860 (+)
G104204 NA non-coding upstream 232940 17701687 ~ 17701919 (+)
G104196 NA non-coding upstream 337415 17597148 ~ 17597444 (+)
G104190 NA non-coding upstream 449673 17482124 ~ 17485186 (+)
G104392 NA non-coding downstream 26209 17970934 ~ 17992147 (+)
G104396 cbs,LOC107715910,LOC106593678,LOC107557921,LOC106562750 non-coding downstream 32571 17977296 ~ 17982804 (+)
G104445 NA non-coding downstream 149318 18094043 ~ 18095156 (+)
G104448 NA non-coding downstream 225821 18170546 ~ 18170758 (+)
G104446 NA non-coding downstream 243985 18188710 ~ 18191210 (+)
LOC111193547 NA other upstream 515721 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 795886 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 1040267 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 1360426 16555694 ~ 16574433 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other upstream 1427072 16463938 ~ 16507787 (+)
G104656 pcdh8 other downstream 974335 18919060 ~ 18923203 (+)
nfkbiz nfkbiz other downstream 1789501 19734226 ~ 19744924 (+)
G105276 NA other downstream 3044548 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 3074313 21019038 ~ 21028990 (+)
G105357 NA other downstream 3382467 21327192 ~ 21369204 (+)

Expression


Co-expression Network