LOC103028349


Basic Information

Item Value
gene id LOC103028349
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 2222873 ~ 2230023 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229536.3
CACTTCTCgctcagcagtgtgtgtgtgagtgtgtgtgtgagagtgtgtgaattCTTCAGCATCCAGAGATTAAACTCACTCCCATGATCGATAACAGGAGGTCACTCAGATCACTCCAACTACATGAGatatCTGGTGCATGTCGTGTGTGATGGGTCTGAAGAGGAAGCTGGGGCGGGAGGACGAGGGCGAGGGCGTACAGGAGCCGAAGCTGCGGGCGGTGGTGTTGGAGGATGCTGAGGAGGCGTACGCTGTGCAGAGGCAGGCGGTGCTGCAGCTGTCCCTGCAGAAGCTCTGCGCTCAGGTGGAGACGGCTCTGCTGCGCCGCGTCCTCATCACCAACACGCTCAGACACGTCCAGCAGGAGCTCAGCAAGCAGGGGGCGCCGAGCATCGCCCCCGCAGCCGGCGCAGACGCTACCGGGGTCGACTGCGGTTCCGGGGTCGAGGTGGAGGGCAGCCTGACGCCGGCGTGGGTTCTGGAGCAGGATGGGGAACTGTTCTTCTCGCTGCAGTCGTCCGTCCCCGCCCACTCGTCCACGTCCCTCTCCAGAGCTTATCAGAAGGACAGCTTTTCCACGGCGTTGGCTGAAATTGAGGACTTGTGTCCTACGTTAACTTCGCTGGACACTTCTACGTCTATGTCGTCTTCGTCTACCTCTTCGTCTACATCCTCCatctcctcactctctctctcttcgctaATCACCCAACTGGACCCTCAACAAAAACAGACTCAAATTCCTACTGGATTAAACGGGTCATGTGATTACGCAACCTCGTACAGCCCCGTTTGTCTCCCAGAACTTTCTCTAGACGATTTCCTCTTCTCGGACATCGACAACTTCCTGTGTGAGCTGAATGCTTGCAGCCAAAACTCGAGCCTGACCTTACCGTCGGGCTCAACGCCATCCAAGGTCGTCTCCATAACGGACGACTTCATGAGGAGCCTGAGCGGCCAGCATCTTAAACCGGACCTGAACGAGCTGGACCATATCATGGAGGTGCTGGTCGGCTCGTGAAGAACATCAGAACAGAACCCAAATTGAGAGCTTTGAACGAGCACAAGacgtttaataaaaacactgtttctaCAGCTAGTTCAagaagtacaggggttggacaatgaaactgaaacacctggtttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229536.3 True 1147 mRNA 0.55 2 2222873 2230023

Neighbor

gene id symbol gene type direction distance location
LOC103028654 rab1a,LOC108436370,LOC105021598,LOC107676578,LOC107666439,LOC106585917 coding upstream 10064 2205433 ~ 2212809 (+)
cenpm cenpm coding upstream 84667 2131980 ~ 2138206 (+)
LOC103037292 zgc:158803,LOC108411937,LOC108258445,LOC107700834,LOC107598467,LOC107709610,LOC107747154 coding upstream 92226 2117126 ~ 2130647 (+)
mri1 mri1,LOC107594353,LOC107703717,LOC107700835 coding upstream 106921 2099791 ~ 2115952 (+)
cc2d1a NA coding upstream 130149 2069558 ~ 2092724 (+)
vps54 vps54,LOC107709616 coding downstream 78276 2308299 ~ 2328262 (+)
khsrp khsrp coding downstream 139933 2369956 ~ 2389979 (+)
LOC103025604 LOC108436360,LOC107598482,LOC107700849,LOC107747162 coding downstream 171531 2401554 ~ 2415821 (+)
LOC103022670 pgam1,LOC108436383,LOC108258456,LOC107729838,LOC107700858,LOC107598490 coding downstream 274462 2504485 ~ 2506380 (+)
exosc1 exosc1,LOC107700859,LOC107598491 coding downstream 278513 2508536 ~ 2518926 (+)
G100149 NA non-coding upstream 73873 2148473 ~ 2149000 (+)
LOC111193503 NA non-coding upstream 81782 2139826 ~ 2141091 (+)
LOC103038253 NA non-coding upstream 198866 2019883 ~ 2024007 (+)
G100110 NA non-coding upstream 205252 2016723 ~ 2017621 (+)
G100115 NA non-coding upstream 227846 1994437 ~ 1995027 (+)
G100178 NA non-coding downstream 4867 2234890 ~ 2235162 (+)
G100175 NA non-coding downstream 29206 2259229 ~ 2260386 (+)
G100174 NA non-coding downstream 30636 2260659 ~ 2261235 (+)
G100177 NA non-coding downstream 31835 2261858 ~ 2263486 (+)
G100194 NA non-coding downstream 79693 2309716 ~ 2310103 (+)
LOC103031088 NA other upstream 171015 2040094 ~ 2051858 (+)
LOC103031617 NA other upstream 184131 2032895 ~ 2038742 (+)
LOC103038569 NA other upstream 206610 2012029 ~ 2016263 (+)
LOC103047668 NA other upstream 333636 1885228 ~ 1889237 (+)
LOC111193593 NA other upstream 369854 1845491 ~ 1853019 (+)
c12h19orf53 LOC103027500 other downstream 103584 2333607 ~ 2336332 (+)
LOC103026535 slc25a23a,LOC103026535,LOC107594260,LOC107703801,LOC107747161,LOC108258471 other downstream 113596 2343619 ~ 2368564 (+)
avpi1 NA other downstream 221378 2451401 ~ 2463385 (+)
LOC111193601 NA other downstream 263738 2493761 ~ 2500431 (+)
LOC111193505 NA other downstream 380494 2610517 ~ 2625505 (+)

Expression


Co-expression Network