slitrk6 (slitrk6,LOC107674010,LOC107730399,LOC107558904,LOC107737039,LOC107574216,LOC107698122)


Basic Information

Item Value
gene id slitrk6
gene name slitrk6,LOC107674010,LOC107730399,LOC107558904,LOC107737039,LOC107574216,LOC107698122
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 25076936 ~ 25102573 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232254.3
GGAGCTGCTGCGGGACTTCACGCGCTGCGCTGCGGGATGCGGGGGCTTAGCGCGCGGAGCGGCGCGCGCTGGAATTAACAGCACGGCACGATACCGAAGAGAGAAAATGCTGGCCAGGATTCTTCTCCTTTGTTCCTTCTTCGCCGGCGCCAAGTTGCAGGATGTCGAGGGCTTCAAGGCATCGTACAAGGGAGCTTGTGAAGCGTTGTGCCTTTGCGAAGAAAAGGACGGGGTTTTGTACGTGAACTGCGAGGAACGCGGCATCACCAGAATCTCGGATGTGAAGGTGCCGCCGGACCGACCTTTCCACCTGAATCTGTACAAAAACAACCTAGTGGAGCTCCTGCCGGAGGACATGGAACCCTTCAAGAACGCTGTCACTTTGCATCTCGGCGCCAACAGCATACAAGAGCTGGAGCCGGGGGTGTTCAGCGCGCTGGGCTCCCTGAAGAAGTTGCACATCAACAGCAATTTCCTGGTCATGTTGAAGGAGGACACTTTTCACGGCTTAGTGAACTTGGAGTACCTCCAGGCCGACACGAACTTCATCCGGGTCGTGGAGCCTGGGGCCTTCAGCAAACTCGTCCGTCTCAAGGTCCTGATCCTCAACGACAACTCCATCGAGTTCCTACCGAACAACATCTTCCGCTTTGTGCCTCTGACGCACTTGGACCTGCGAGGGAACAAGCTCCAAACGCTTCCCTACGTGGGCTTCCTTGAGCACATCGGACGCATCATCGAGCTCCTGCTGGAGGACAACGACTGGGTCTGCGACTGCCAGATCCTGCACTTAAAGATCTGGATCGAGAACATGCGAGCCCAGTCGTCCATCGGTGAGGTGGTTTGCAGCAGTCCCCATCACCTCAGGGGGAGTACCCTGGCCAAGGTCAAGAGGGACGTACTTTGTCCCTCGCATGCAGACATCAACCTCGAGGAACCGTCCAAGTCCCTGGACATGGTGGTCACCCCTTCCACAAAGGTCATGCAGATTCCAGATGCCAGAGACGACGCAAAGATCCCAACACCTGCCCACGTCCCAAAGACAGCCTGTGTTGCACACTGCTCTTGTCACAACCATCCCAGTGCGGGGTTCCTGATCCACTGTGAGGACAGAGGCATTCAGAGGATATCGGATTTAGGAATACTCCAGCAGAGTCCCAGTAAGCTTGTTTTAACTGGGAACATGATCCAGAGACTCCTGAAGTACGATTTTGTCACCTTCGACAGTTTGGAATTGCTGAACCTCGCCAACAATCAAATCGACTACATCGACAACGAGACGTTCTTGAGTTTGAGCAACCTTAAAAAGCTTTACCTGAATGGAAATAGGATTGAGAAAATCACAGCGACCATGTTTCTGGGTCTCCACAATCTGGAATACTTGTACCTGGAATACAACATCATCAAGGAAATAGAGGCGGGGTCGTTCAACCCCTTGACCAACCTCAAGCTCCTGTTTTTGAACAACAACCATCTCAACGCTCTTCCGGCGCAAATATTCCGAAACGTGCCCTTGACCAAGCTGAACCTGAGAAAGAACCTGTTCATGCACCTGCCGGTCAGCAATGTCTTGGACCAGCTGGACTTTCTGGAGCAGATTTATCTTGAGGACAACCCTTGGGACTGTACCTGCGACCTGGTGGGTCTTAAGCAATGGGCGGAAAAGCTGAGGAAGGACACACTGGTGGGTACCATCTTGTGCCACAGTCCTAGGAAGGTGGCAAATGCAGAGATCAGGAGCTTAAGACATGACCTCCTCTGCCCAGGTCTGGTCACCCATGACTCTTTGGGGAACTCAGCTGAGTTTGGTGTCGCCACAACTGCAGCCCCTGACGGTGGAACCAGTGGCTTCTTTCGATCCCTGACGGAGGCCgtccctctctctgtcctcaTTCTTTGCCTCCTAATCCTGTTGCTAACTGTCATCTTCTGCTCCGCCGGGATCGTGGTCTTTGTCCTGCACCGGCGTCGCCGGCAGTCCAAGAAAAAGCAGGTTGAGGAACAGCCACGTGAAAGCAGCCCCATCCACTTACATTACAGCATGTACGGCCAGAAGACGACGCACCACGTCGCCGAGAGGCACGCCACGGCCATGTACGACGAAGCTTCCAGAAGTCCCATCGTCCAGGTGTGCCGAAACCCCAGCTACTGCTCTCAGCACAAAGAGTACGACACTGAGGATTACGAGACGGAGAAacccaaccacctttgccacaGCATCACGGACAAGGAGAACGGTTCTCCTTTAACGGGATCCACGTTGAAATACAGGGCCGTGAGCGAGTACCCTGCTGAGTTTGTGGCTCTGGGTGATGCGAGCTCCTTGTACAAAAACATCCTGGAGCGAGAGCgtgagctccagcagctcagcaTCACGGAATACCTCAGGAAAAACATCTCGCAGCTACAGCCAGCCGTGGACATGCAAGTCCCCGGGCACCACAAGGAGCTGAAACTGATGGAGACGCTCATGTACACCAGGCCGAGGAAGGTCATGGTGGAACACCAGACTAAGAACGAGTACTTTGAGCTGAAAGCCAACTTGCACACTGAACCAGACTACCTGGAAGTGCTAGAGCATCAGACAGCATTCAATTAGGACGTTAGGATGCATGAACTGCTGTTGTACTTTGGAGTCACGCTCCACATTAGTGGTGCATGGTTTGAAAGATAGCGTAGATATAAAAGACGATATTCCACAATAAAAAAGTGCCTTCACTAGTTTTTTTCGAGCTGTCTTTAGAGTTGTTACAAAACGAACTGAATCAAAAAGCCAGACAGTAAGGTAAGAGGTAAGACACCTGCCTCTTATCTTCGTTTACCTGGTTGCAGGGGTCAGACAGGATGGTTTAACAGGTTCTTGTAAAGAAAGAGGGACGTTTAGCCCTTTTGTAATTCCACCGAAGGACGGGGGAAGGGATGTTGTTACAGCAGGTAGACACATCAGGTCTGGCAGGCGTTCTCCTTTTTCCGTTCTTTCTGCCAAGTCTTGCGACTCTTGAAAATTTGCCATAAGCGTCTTTCACGTGCCATGTAGCGAAAACACAACTACTTTCTACTTACTTCCCACACCTGAAATGTACGTCtagcactttcttttttttaatacgcACCACTTTTGTCCCCATGCGACAGGTCTGTgaagtcatatttatttttttatcggTATACCGGCGACACAAAAGCCACAAAAATCCCATATATAACAGTGAGCGGCAGCAGCGACAGTTACAACCCTCCCTGTCCGTGCCGTCGTTTCCTCCGTCGTCCAGATAAGATAAGCACTCGCATCTCATCACAGCCCACAGCTTTGAAGTCCCGTCTGCTGCAGAGTCGTAATttaacgagaaaaaaaaaatagaattgcaCTACTCCAAACGCCATTtacgaaaaaataaataaataaataaaaaagatggcACCCGACAATCAAAGTACTGTGAGGAAGGCAGGCGGATCTACGGGTGGGAAATTGTCCATTTGAGATACCTGGTGAGTGCAGCTACTGGTTGTAAGacgtggtgttttttttttttttttaatttccaatttttttttttccagaactctATAACAGactctatattttctctcagcATGATTCTTCTTATGCAGGGTGTTTTATCACATCTTTGtttgacgaaaaaaaaaaagtgaaaaaagttacaaaaaaaaaacaacgtcaAAGCAAAGCTCAGCCTTGAAATGTTTCACTGTACGTAAGAGCACCATAGCTTTATTTTGTACCGACGTagatcagatttatttattctgtatgtatatataattatatttgtacataattttacatttatatatgtctGTGTGCCTTTTCATGTGTTTATGATCGatcgattgattgattgatgggcTGACTgtctgattaattgattgatctCTGAgatgtaaataaagtttatattgAGTGTGTTACAATATACCGGCCACCTAAActctaaatatacagtaaatgtaacataaattagcagcattaaCAGACGTCCAGCACTGggtttgtttcttttatatatcatttcatatcatatcatattccCTATGCAGGTGCAATTCCTTTGGACTGGTCAATAAAGGATTACTGTTTGATCTCTAA

Function

symbol description
slitrk6 Predicted to be involved in axonogenesis. Predicted to act upstream of or within regulation of presynapse assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in nervous system and otic vesicle. Human ortholog(s) of this gene implicated in high myopia-sensorineural deafness syndrome. Orthologous to human SLITRK6 (SLIT and NTRK like family member 6).

NR:

description
PREDICTED: SLIT and NTRK-like protein 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232254.3 True 4111 mRNA 0.48 2 25076936 25102573

Neighbor

gene id symbol gene type direction distance location
gpc6 LOC108414264,LOC105911916,LOC107730398,LOC101477426,LOC100710496,LOC107744956 coding upstream 961475 23970691 ~ 24115461 (+)
LOC103035907 NA coding upstream 1438048 23632379 ~ 23638888 (+)
chtf18 chtf18,LOC107725360 coding upstream 1524238 23524716 ~ 23552698 (+)
plk1 plk1,LOC107722962 coding upstream 1586731 23480456 ~ 23490205 (+)
LOC107197111 NA coding upstream 1617421 23454456 ~ 23459515 (+)
LOC103022503 NA coding downstream 270233 25372806 ~ 25374832 (+)
LOC103023109 NA coding downstream 280299 25382872 ~ 25386300 (+)
LOC111193564 NA coding downstream 316967 25419540 ~ 25422258 (+)
LOC103025458 NA coding downstream 321139 25423712 ~ 25449279 (+)
LOC111193460 NA coding downstream 382270 25484843 ~ 25519366 (+)
G106220 NA non-coding upstream 167907 24908744 ~ 24909029 (+)
G106217 NA non-coding upstream 169005 24907148 ~ 24907931 (+)
G106205 NA non-coding upstream 278735 24797868 ~ 24798201 (+)
G106195 NA non-coding upstream 360132 24716537 ~ 24716804 (+)
G106172 NA non-coding upstream 539119 24537561 ~ 24537817 (+)
G106248 NA non-coding downstream 109006 25211579 ~ 25212076 (+)
G106250 NA non-coding downstream 110630 25213203 ~ 25213469 (+)
G106255 NA non-coding downstream 257512 25360085 ~ 25402912 (+)
LOC103043670 NA non-coding downstream 298344 25400917 ~ 25401805 (+)
G106274 NA non-coding downstream 349564 25452137 ~ 25542268 (+)
G106146 NA other upstream 663838 24411208 ~ 24413098 (+)
G106036 NA other upstream 1087344 23987207 ~ 23989592 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other upstream 1153165 23915635 ~ 23923771 (+)
LOC103038624 zgc:77849,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708,LOC107564565 other upstream 2256840 22810079 ~ 22820096 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other upstream 2487975 22525257 ~ 22588961 (+)
LOC111193563 NA other downstream 259171 25361744 ~ 25369439 (+)
LOC111193565 NA other downstream 356242 25458815 ~ 25570821 (+)
LOC103037236 NA other downstream 1051844 26154417 ~ 26171801 (+)
G106661 lancl1 other downstream 2911943 28014516 ~ 28022047 (+)
G106673 NA other downstream 2963779 28066352 ~ 28066983 (+)

Expression


Co-expression Network