mdh1b


Basic Information

Item Value
gene id mdh1b
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 20944945 ~ 20957033 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007233712.3
ATGGCTAAGTTTGTGCTAGCAGGGAGGGCAGACTGCCCACACTATGCTAAGACTGAACTGCTGGCAGACCTGCTGCAGAAGATCCTGCCAGATTTCCACATTCACAAGATCTGTGTTCACCCCAGTGACTGGCAGGACTGGCTCGAAGGAACGTGTTCATCAAATGGGTGGAAGCATGAGAGCAGTCCCATAGTGTGGAGAGAGCTGATTGACCGAGGGGGCAAGGGGATGCTTCTTGGGGGGTTCAGTGATTTTTTGGAACATGTACAGGGCTACTATGGTATCACCTCCGATATGGGATCTGAGCAAATGATGAAGATTGCAGCAGAGAATCTGCGGGTGACTGAGGTGCTCATGGAGGAGGCGGCTCGCCAAAATCAGTCACTTCAAGTGTTTCACATCTGGATCACCGGTGCTCTAAGCCCCACTTGCTACAGTCTCATCCCAAAGCTCTTCAccactgaactgatcagggacATCTCCACCATCAGCCTCCATCTTTTGGACGTGAATAGTAGTGAAGAATCTCTACTGGGTCTTAAAATGGAGACTGAGGACTTGGCCCTGTCTCAGCTCCACGAGGTCACTGTTCACTCTGACATGACCTGGGCCTTccagtcagctgacctcatccTCTTTCTAGATGACTGGCCATCAAATTCTGAGACACCAGTAGAGCAGGGTGACAAGGACCACATGGTGAGCCAGGTGGCAGAGCGGTTTCGATCCTACGGCCGCCTTGTTGAGGCCAATGCGCAGAAGGACGTCAGGGTGATGGTGGCGGGAGACTCGTACGTCAACCTGAAGTGTTCTCTGCTGATTGAGAACGCACCCTCAGTCGACCCCTGTCGCTTTGTGGCAATGACAACACAGCTGGAGTACGAGGCGAGGGCTCAACTGGCAGAGAAGCTGTCAGTGAAGACCACAGACATCACTGACATTATCGTTTGGGGCAATATCAGTGGCAGTTCCCATGTTGACCTACAGAGGGCGAAGGTTTTCAGATATAAGGGGTCTATCTGGGGGCCCACAGGCTTTTCTCAGCAAGTATTGGAGATGATTTATGATAAAAAATGGCTGGAGACTGACTTTCTGAGCTTAGTTGCCTTGAGAAGACGTGCTATTTCCCTCAAGACAAACAGGACTGCAGCAAATTCGGCAACCAATGGAATCCTTGCAGTTCTTAATGCTTGGAGCAACTGTTACTCTTCTAGGGAAGTCTTCTCATTGGGTGTAGTCAGTTCAGGAAACTTCGGTGTTCCCGCTGGGCTGGTTTTCTCTGTTCCTGTGAAATTTCACAACGGCgactggtcagtgtgctcagATATCACCATAAATGATGAGCTGAGGAGTAAACTGGGAGTTGCCATCAACGAGCTTTTAGTGGAAAAGAACACTGCAGATGGAGTAATGAAGAATGATCCAGTTAACTGAAAACTGGCTGCctcatcaaaaatatatatttttatttttcagtaaaaCCATTAAAGGATATCAAAACTGGTA
>XM_022674877.1
atgaaataaacgaAATAAAAGTAGATTTTGGGGGGCGGGGCAAACAAAAAGACCGAGTGGTTGCCTAGCAACTGATGTACATTGAAGACTCATGGCTAAGTTTGTGCTAGCAGGGAGGGCAGACTGCCCACACTATGCTAAGACTGAACTGCTGGCAGACCTGCTGCAGAAGATCCTGCCAGATTTCCACATTCACAAGATCTGTGTTCACCCCAGTGACTGGCAGGACTGGCTCGAAGGAACGTGTTCATCAAATGGGTGGAAGCATGAGAGCAGTCCCATAGTGTGGAGAGAGCTGATTGACCGAGGGGGCAAGGGGATGCTTCTTGGGGGGTTCAGTGATTTTTTGGAACATGTACAGGGCTACTATGGTATCACCTCCGATATGGGATCTGAGCAAATGATGAAGATTGCAGCAGAGAATCTGCGGGTGACTGAGGTGCTCATGGAGGAGGCGGCTCGCCAAAATCAGTCACTTCAAGTGTTTCACATCTGGATCACCGGTGCTCTAAGCCCCACTTGCTACAGTCTCATCCCAAAGCTCTTCAccactgaactgatcagggacATCTCCACCATCAGCCTCCATCTTTTGGACGTGAATAGTAGTGAAGAATCTCTACTGGGTCTTAAAATGGAGACTGAGGACTTGGCCCTGTCTCAGCTCCACGAGGTCACTGTTCACTCTGACATGACCTGGGCCTTccagtcagctgacctcatccTCTTTCTAGATGACTGGCCATCAAATTCTGAGACACCAGTAGAGCAGGGTGACAAGGACCACATGGTGAGCCAGGTGGCAGAGCGGTTTCGATCCTACGGCCGCCTTGTTGAGGCCAATGCGCAGAAGGACGTCAGGGTGATGGTGGCGGGAGACTCGTACGTCAACCTGAAGTGTTCTCTGCTGATTGAGAACGCACCCTCAGTCGACCCCTGTCGCTTTGTGGCAATGACAACACAGCTGGAGTACGAGGCGAGGGCTCAACTGGCAGAGAAGCTGTCAGTGAAGACCACAGACATCACTGACATTATCGTTTGGGGCAATATCAGTGGCAGTTCCCATGTTGACCTACAGAGGGCGAAGGTTTTCAGATATAAGGGGTCTATCTGGGGGCCCACAGGCTTTTCTCAGCAAGTATTGGAGATGATTTATGATAAGAAACTTCGGTGTTCCCGCTGGGCTGGTTTTCTCTGTTCCTGTGAAATTTCACAACGGCgactggtcagtgtgctcagATATCACCATAAATGATGAGCTGAGGAGTAAACTGGGAGTTGCCATCAACGAGCTTTTAGTGGAAAAGAACACTGCAGATGGAGTAATGAAGAATGATCCAGTTAACTGAAAACTGGCTGCctcatcaaaaatatatatttttatttttcagtaaaaCCATTAAAGGATATCAAAACTGGTAGtgttgcatctcaaaaaattgtaatactattacatattttatatgtaatacTAATAccccaggggcctcatgtac
>XM_022674878.1
aatgaaataaacgaAATAAAAGTAGATTTTGGGGGGCGGGGCAAACAAAAAGACCGAGTGGTTGCCTAGCAACTGATGTACATTGAAGACTCATGGCTAAGTTTGTGCTAGCAGGGAGGGCAGACTGCCCACACTATGCTAAGACTGAACTGCTGGCAGACCTGCTGCAGAAGATCCTGCCAGATTTCCACATTCACAAGATCTGTGTTCACCCCAGTGACTGGCAGGACTGGCTCGAAGGAACGTGTTCATCAAATGGGTGGAAGCATGAGAGCAGTCCCATAGTGTGGAGAGAGCTGATTGACCGAGGGGGCAAGGGGATGCTTCTTGGGGGGTTCAGTGATTTTTTGGAACATGTACAGGGCTACTATGGTATCACCTCCGATATGGGATCTGAGCAAATGATGAAGATTGCAGCAGAGAATCTGCGGGTGACTGAGGTGCTCATGGAGGAGGCGGCTCGCCAAAATCAGTCACTTCAAGTGTTTCACATCTGGATCACCGGTGCTCTAAGCCCCACTTGCTACAGTCTCATCCCAAAGCTCTTCAccactgaactgatcagggacATCTCCACCATCAGCCTCCATCTTTTGGACGTGAATAGTAGTGAAGAATCTCTACTGGGTCTTAAAATGGAGACTGAGGACTTGGCCCTGTCTCAGCTCCACGAGGTCACTGTTCACTCTGACATGACCTGGGCCTTccagtcagctgacctcatccTCTTTCTAGATGACTGGCCATCAAATTCTGAGACACCAGTAGAGCAGGGTGACAAGGACCACATGGTGAGCCAGGTGGCAGAGCGGTTTCGATCCTACGGCCGCCTTGTTGAGGCCAATGCGCAGAAGGACGTCAGGGTGATGGTGGCGGGAGACTCGTACGTCAACCTGAAGTGTTCTCTGCTGATTGAGAACGCACCCTCAGTCGACCCCTGTCGCTTTGTGGCAATGACAACACAGCTGGAGTACGAGGCGAGGGCTCAACTGGCAGAGAAGCTGTCAGTGAAGACCACAGACATCACTGACATTATCGTTTGGGGCAATATCAGTGGCAGTTCCCATGTTGACCTACAGAGGGCGAAGGTTTTCAGATATAAGGGGTCTATCTGGGGGCCCACAGGCTTTTCTCAGCAAGTATTGGAGATGATTTATGATAAGAAACTTCGGTGTTCCCGCTGGGCTGGTTTTCTCTGTTCCTGTGAAATTTCACAACGGCgactggtcagtgtgctcagATATCACCATAAATGATGAGCTGAGGAGTAAACTGGGAGTTGCCATCAACGAGCTTTTAGTGG

Function

NR:

description
putative malate dehydrogenase 1B isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007233712.3 True 1506 mRNA 0.49 9 20945037 20956958
XM_022674877.1 False 1496 mRNA 0.48 8 20944946 20957033
XM_022674878.1 False 1303 mRNA 0.51 7 20944945 20956371

Neighbor

gene id symbol gene type direction distance location
LOC103031253 hecw2,LOC107676038,LOC108258347,LOC107674007,LOC107706834 coding upstream 36170 20860945 ~ 20908775 (+)
gtf3c3 gtf3c3,LOC107750061 coding upstream 117670 20804054 ~ 20827275 (+)
LOC103029333 LOC108437114,LOC108258365 coding upstream 144414 20783070 ~ 20800531 (+)
LOC103029654 LOC108437114,LOC108258365 coding upstream 170616 20765742 ~ 20774329 (+)
tmem255b tmem255b coding upstream 351615 20566129 ~ 20593330 (+)
nrp2 nrp2,nrp2a,LOC107556288,LOC107750056,LOC107749808 coding downstream 460403 21417436 ~ 21561654 (+)
LOC103037976 LOC103037976,LOC108437127 coding downstream 654539 21611572 ~ 21616436 (+)
LOC103035679 NA coding downstream 969316 21926349 ~ 21934395 (+)
LOC103046323 LOC108441470 coding downstream 1356193 22313226 ~ 22480428 (+)
LOC111193458 NA coding downstream 1552413 22509446 ~ 22517576 (+)
G105270 NA non-coding upstream 35660 20871791 ~ 20909285 (+)
G105275 NA non-coding upstream 45636 20898201 ~ 20899309 (+)
G105271 NA non-coding upstream 84065 20828368 ~ 20860880 (+)
G105235 NA non-coding upstream 189413 20755293 ~ 20755532 (+)
G105079 NA non-coding upstream 292684 20649096 ~ 20652261 (+)
G105300 cnppd1,LOC107549439,LOC107676054,LOC107750058 non-coding downstream 38726 20995759 ~ 20999373 (+)
G105303 NA non-coding downstream 43106 21000139 ~ 21004638 (+)
G105305 NA non-coding downstream 46712 21003745 ~ 21005854 (+)
G105311 NA non-coding downstream 56150 21013183 ~ 21015484 (+)
G105363 NA non-coding downstream 253700 21210733 ~ 21210986 (+)
nfkbiz nfkbiz other upstream 1200021 19734226 ~ 19744924 (+)
G104656 pcdh8 other upstream 2021742 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 3525807 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 3805972 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 4050353 16888386 ~ 16894592 (+)
G105276 NA other downstream 32240 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 62005 21019038 ~ 21028990 (+)
G105357 NA other downstream 370159 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 1298052 22255085 ~ 22283453 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other downstream 1568224 22525257 ~ 22588961 (+)

Expression


Co-expression Network