LOC103028492


Basic Information

Item Value
gene id LOC103028492
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 1233090 ~ 1236197 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236293.3
AAATACTTGTAAATCATAGGAAGCCAGCTCTATGAAGTGCCTTATATAAGCTCCTCCTCCTTCCAGTCTGTGTGAAGGAagataaaaaaatctttcagtTTCATTTACTGCTCTCCTTTTAGCTGAGACAACACCCATCACGCTGCTGAAACTACAAATCACTATGTATTAGTGATCAGACTCTCAGgaCTCCAGCACAAAACAGCAGAGCATCAAATTCCAGTCTCTCAGTTCAGACTCACTCCGGAGAAATGGACGgAGAAGAGCTGAGGATAGTCATCATGGGAAAAACTGCTGTTGGCAAAACTGCTGTTGGCAACTTGATTCTTGGAGAGAACGGGTTTAAAGAAGAACATTCACTTGAATGGGGACTATATTTTTgccaaagagaagaaaaagtgaTCCATGGCAGAAAATTTGTTTTAATAGACACACCTGGAATTTTTGATAGTGATATGTCAGAGGAAGATCTTATGCAAGAGATAATGTCCTTTATGTCAGAGTGCACACCAGGTCCTCATGTCTTTATTTTAGTGATGGAGGTAGCAAGGTACACCAGTGAAAACCATCAGGTAGTGGAGAATTTGCTGAAGTATTTTAGTGATGATGTTTTTAGTCACATGGtgctgctgtttacacatgGTGAGGACCTGGATGACAACATGTCAATCTGTGACTTCATAAACAAGTCTGCTGTTGAAGAGAAGAAGAGTGGAATACAATCTCTGAAAGATCTGGCTGAAAGGTGTGGGAATCGGGTTCATGTAGTCGACAATAAATACTGGAACGAGAACAGCAGAGATTTATCTGTATTAGCTACACTGCAGTGGTTTAACCTTTCTGACCAGGCTCTCAGAGAAATTACTGATATGTTAGATAAATCGTTAAGACTAGCTGAAGAAACACCCTGGTTTAACGTACTGTCAGAACAATATGACAATGTAGAGGCAAAAAATGGAGATGAAAGTGAAGTGATGAGCAGTAGAGAATACAGACAAAACAAATTTCAACTCACCCAGCTGATGAAGAGcgtaaaaactattttaaggGACAATAAAGGACGATACTACAGAAATGAAGCCTTTATAAAGGACAGGAGAAGCCGTTAATGAAGATGTGAGAAACAGACTACAGGAGCAACACTTGGAGTGGACTTGTACGGCTACCTCTATGGGGTACACTAACATCACCTTggacaatagaaaaaaaagcctGGCCACATCACTTTAACACCTTTTGCTCAGCCAGATCTACTGAAGTAAAAGgacattgttttaaatgaagtaTCTAGAATGAATgttgtttatataaaatgtgaATATGTTCATGTTAACTTTAATTTGATTGGTTATTGCAAGAAATACTATGTGAAGAAATGCTGAAGATAACCTAAACGTGTTATTTCTGACCATTGGAATTAATCTCTCCATTCTGAAGAGACACTCCCCTTCCTGATCCTGCTGTCTTCAGGATTGCCTGGTGGTGATCAAAGGTTGTGATGATCAAAGGTATCCAGCGTAAACAGTGCCAAATTCCAATTTATATGGAACTACTAAGTGCATTGTTTTGGTTGAATACTTGAGAAAAGCATAAGGAGACAAATATTTTTCAGATACACGATGCAACATTCTTAACTGTAATCTTGTTTGATTTGATCTTTTGTATTACTTtagaatattgttatattg
>XM_007236294.3
TTAAATACTTGTAAATCATAGGAAGCCAGCTCTATGAAGTGCCTTATATAAGCTCCTCCTCCTTCCAGTCTGTGTGAAGGAagataaaaaaatctttcagtTTCATTTACTGCTCTCCTTTTAGCTGAGACAACACCCATCACGCTGCTGAAACTACAAATCACTATGTATTAGTGATCAGACTCTCAGgaCTCCAGCACAAAACAGCAGAGCATCAAATTCCAGTCTCTCAGTTCAGACTCACTCCGGAGAAATGGACGAAGAGCTGAGGATAGTCATCATGGGAAAAACTGCTGTTGGCAAAACTGCTGTTGGCAACTTGATTCTTGGAGAGAACGGGTTTAAAGAAGAACATTCACTTGAATGGGGACTATATTTTTgccaaagagaagaaaaagtgaTCCATGGCAGAAAATTTGTTTTAATAGACACACCTGGAATTTTTGATAGTGATATGTCAGAGGAAGATCTTATGCAAGAGATAATGTCCTTTATGTCAGAGTGCACACCAGGTCCTCATGTCTTTATTTTAGTGATGGAGGTAGCAAGGTACACCAGTGAAAACCATCAGGTAGTGGAGAATTTGCTGAAGTATTTTAGTGATGATGTTTTTAGTCACATGGtgctgctgtttacacatgGTGAGGACCTGGATGACAACATGTCAATCTGTGACTTCATAAACAAGTCTGCTGTTGAAGAGAAGAAGAGTGGAATACAATCTCTGAAAGATCTGGCTGAAAGGTGTGGGAATCGGGTTCATGTAGTCGACAATAAATACTGGAACGAGAACAGCAGAGATTTATCTGTATTAGCTACACTGCAGTGGTTTAACCTTTCTGACCAGGCTCTCAGAGAAATTACTGATATGTTAGATAAATCGTTAAGACTAGCTGAAGAAACACCCTGGTTTAACGTACTGTCAGAACAATATGACAATGTAGAGGCAAAAAATGGAGATGAAAGTGAAGTGATGAGCAGTAGAGAATACAGACAAAACAAATTTCAACTCACCCAGCTGATGAAGAGcgtaaaaactattttaaggGACAATAAAGGACGATACTACAGAAATGAAGCCTTTATAAAGGACAGGAGAAGCCGTTAATGAAGATGTGAGAAACAGACTACAGGAGCAACACTTGGAGTGGACTTGTACGGCTACCTCTATGGGGTACACTAACATCACCTTggacaatagaaaaaaaagcctGGCCACATCACTTTAACACCTTTTGCTCAGCCAGATCTACTGAAGTAAAAGgacattgttttaaatgaagtaTCTAGAATGAATgttgtttatataaaatgtgaATATGTTCATGTTAACTTTAATTTGATTGGTTATTGCAAGAAATACTATGTGAAGAAATGCTGAAGATAACCTAAACGTGTTATTTCTGACCATTGGAATTAATCTCTCCATTCTGAAGAGACACTCCCCTTCCTGATCCTGCTGTCTTCAGGATTGCCTGGTGGTGATCAAAGGTTGTGATGATCAAAGGTATCCAGCGTAAACAGTGCCAAATTCCAATTTATATGGAACTACTAAGTGCATTGTTTTGGTTGAATACTTGAGAAAAGCATAAGGAGACAAATATTTTTCAGATACACGATGCAACATTCTTAACTGTAATCTTGTTTGATTTGATCTTTTGTATTACTTtagaatattgttatattg
>XM_007236295.3
AAATACTTGTAAATCATAGGAAGCCAGCTCTATGAAGTGCCTTATATAAGCTCCTCCTCCTTCCAGTCTGTGTGAAGGAagataaaaaaatctttcagtTTCATTTACTGCTCTCCTTTTAGCTGAGACAACACCCATCACGCTGCTGAAACTACAAATCACTATGTATTAGTGATCAGACTCTCAGgaCTCCAGCACAAAACAGCAGAGCATCAAATTCCAGTCTCTCAGTTCAGACTCACTCCGGAGAAATGGACGAGCTGAGGATAGTCATCATGGGAAAAACTGCTGTTGGCAAAACTGCTGTTGGCAACTTGATTCTTGGAGAGAACGGGTTTAAAGAAGAACATTCACTTGAATGGGGACTATATTTTTgccaaagagaagaaaaagtgaTCCATGGCAGAAAATTTGTTTTAATAGACACACCTGGAATTTTTGATAGTGATATGTCAGAGGAAGATCTTATGCAAGAGATAATGTCCTTTATGTCAGAGTGCACACCAGGTCCTCATGTCTTTATTTTAGTGATGGAGGTAGCAAGGTACACCAGTGAAAACCATCAGGTAGTGGAGAATTTGCTGAAGTATTTTAGTGATGATGTTTTTAGTCACATGGtgctgctgtttacacatgGTGAGGACCTGGATGACAACATGTCAATCTGTGACTTCATAAACAAGTCTGCTGTTGAAGAGAAGAAGAGTGGAATACAATCTCTGAAAGATCTGGCTGAAAGGTGTGGGAATCGGGTTCATGTAGTCGACAATAAATACTGGAACGAGAACAGCAGAGATTTATCTGTATTAGCTACACTGCAGTGGTTTAACCTTTCTGACCAGGCTCTCAGAGAAATTACTGATATGTTAGATAAATCGTTAAGACTAGCTGAAGAAACACCCTGGTTTAACGTACTGTCAGAACAATATGACAATGTAGAGGCAAAAAATGGAGATGAAAGTGAAGTGATGAGCAGTAGAGAATACAGACAAAACAAATTTCAACTCACCCAGCTGATGAAGAGcgtaaaaactattttaaggGACAATAAAGGACGATACTACAGAAATGAAGCCTTTATAAAGGACAGGAGAAGCCGTTAATGAAGATGTGAGAAACAGACTACAGGAGCAACACTTGGAGTGGACTTGTACGGCTACCTCTATGGGGTACACTAACATCACCTTggacaatagaaaaaaaagcctGGCCACATCACTTTAACACCTTTTGCTCAGCCAGATCTACTGAAGTAAAAGgacattgttttaaatgaagtaTCTAGAATGAATgttgtttatataaaatgtgaATATGTTCATGTTAACTTTAATTTGATTGGTTATTGCAAGAAATACTATGTGAAGAAATGCTGAAGATAACCTAAACGTGTTATTTCTGACCATTGGAATTAATCTCTCCATTCTGAAGAGACACTCCCCTTCCTGATCCTGCTGTCTTCAGGATTGCCTGGTGGTGATCAAAGGTTGTGATGATCAAAGGTATCCAGCGTAAACAGTGCCAAATTCCAATTTATATGGAACTACTAAGTGCATTGTTTTGGTTGAATACTTGAGAAAAGCATAAGGAGACAAATATTTTTCAGATACACGATGCAACATTCTTAACTGTAATCTTGTTTGATTTGATCTTTTGTATTACTTtagaatattgttatattg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236293.3 True 1688 mRNA 0.38 3 1233092 1236197
XM_007236294.3 False 1687 mRNA 0.38 3 1233090 1236197
XM_007236295.3 False 1682 mRNA 0.38 3 1233092 1236197

Neighbor

gene id symbol gene type direction distance location
LOC111193496 NA coding upstream 4307 1218757 ~ 1228783 (+)
LOC103046652 NA coding upstream 61267 1151611 ~ 1171823 (+)
LOC103023562 NA coding upstream 264977 961275 ~ 968113 (+)
LOC103026766 NA coding upstream 281476 941924 ~ 951614 (+)
LOC103027056 LOC108413120 coding upstream 298889 904230 ~ 934201 (+)
LOC103027248 LOC103027248 coding downstream 3966 1240163 ~ 1243893 (+)
LOC103027651 NA coding downstream 12370 1248567 ~ 1253895 (+)
LOC103031973 dnm2,LOC105929264 coding downstream 66956 1303153 ~ 1326104 (+)
LOC103026147 NA coding downstream 119510 1355707 ~ 1366818 (+)
LOC111193583 NA coding downstream 276956 1513153 ~ 1518775 (+)
G99674 pin1,LOC107571794,LOC107727173,LOC107685032,LOC107662743 non-coding upstream 125594 1039796 ~ 1107496 (+)
G99677 NA non-coding upstream 129381 1051900 ~ 1103709 (+)
G99690 LOC108412243 non-coding upstream 147293 1081118 ~ 1085797 (+)
G99682 NA non-coding upstream 170909 1061716 ~ 1062181 (+)
G99671 NA non-coding upstream 204866 1027849 ~ 1028224 (+)
LOC103027978 NA non-coding downstream 20847 1257044 ~ 1289874 (+)
G99726 NA non-coding downstream 25545 1261742 ~ 1263514 (+)
G99734 NA non-coding downstream 97073 1333270 ~ 1333914 (+)
G99736 NA non-coding downstream 120895 1357092 ~ 1358954 (+)
G99899 NA non-coding downstream 140821 1377018 ~ 1419192 (+)
G99710 NA other upstream 48821 1181427 ~ 1184269 (+)
ubl5 ubl5 other upstream 122498 1108476 ~ 1110592 (+)
LOC111193492 NA other upstream 639890 590183 ~ 593200 (+)
LOC111193579 NA other upstream 692619 534029 ~ 540471 (+)
LOC103036139 NA other upstream 736714 487474 ~ 496376 (+)
LOC111193582 NA other downstream 60218 1296415 ~ 1298377 (+)
LOC111193593 NA other downstream 609294 1845491 ~ 1853019 (+)
LOC103047668 NA other downstream 649031 1885228 ~ 1889237 (+)
LOC103038569 NA other downstream 775832 2012029 ~ 2016263 (+)
LOC103031617 NA other downstream 796698 2032895 ~ 2038742 (+)

Expression


Co-expression Network